Genome-wide association mapping reveals novel sources of resistance to northern corn leaf blight in maize

BMC Plant Biology

Table 3 Candidate genes, chromosomal position and SNPs significantly associated with mean rating detected by SNP-based GWAS

No.	Candidate gene	Chromosome	Physical position (AGP v.2)	SNP	Allele	P value	FDR*	MAF^a	R²	Annotation
1	Intergenic	1	264172677	PZE-101213762	C,A	6.44E-06	0.029	0.18	0.02
2	GRMZM2G150496	2	3735379	PZE-102007366	G,A	1.56E-05	0.048	0.18	0.02	Inositol-pentakis-phosphate 2-kinase
3	Intergenic	3	103166745	PZE-103062307	A,G	3.05E-06	0.025	0.09	0.03
4	GRMZM2G171605	4	186590896	PZE-104110312	A,G	5.33E-08	0.002	0.18	0.03	4'phosphopantetheinyl transferase
5	AC233870.1_FG006	6	167018912	PHM5529.7	C,A	1.01E-05	0.036	0.07	0.02
6	GRMZM2G151651	7	33447828	SYNGENTA5726	G,A	1.06E-07	0.002	0.08	0.03
7	GRMZM2G100107	7	91683817	SYN16533	G,A	5.79E-06	0.029	0.44	0.02	SANT associated
8	GRMZM2G100107	7	91684720	PZE-107044973	G,A	4.71E-06	0.027	0.43	0.02	SANT associated
9	GRMZM2G100107	7	91685110	SYN16536	G,A	6.81E-06	0.029	0.43	0.02	SANT associated
10	Intergenic	7	91686972	PZE-107044977	A,C	4.34E-06	0.027	0.44	0.03
11	Intergenic	7	92335869	PZE-107045210	A,G	1.38E-06	0.021	0.21	0.03
12	Intergenic	9	25257190	SYN28207	A,G	3.18E-06	0.025	0.1	0.03
13	GRMZM2G020254	10	65416520	PZE-110034333	A,G	8.72E-06	0.034	0.21	0.02	DNA-binding WRKY
14	GRMZM2G158141	10	91956279	PZE-110049068	G,A	1.45E-05	0.048	0.1	0.02	Antifreeze protein

ISSN: 1471-2229