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Table 2 Candidate genes, chromosomal position and SNPs significantly associated with Area under Disease Progress Curve (AUDPC) detected by SNP-based GWAS

From: Genome-wide association mapping reveals novel sources of resistance to northern corn leaf blight in maize

No.

Candidate gene

Chromosome

Physical position (AGP v.2)

SNP

Allele

P value

FDR*

MAFa

R2

Annotation

1

Intergenic

3

103166745

PZE-103062307

A,G

2.67E-06

0.031

0.09

0.02

 

2

Intergenic

3

103544700

PZE-103062210

A,G

1.88E-05

0.074

0.17

0.02

 

3

Intergenic

3

103769943

PZE-103062159

A,C

9.87E-06

0.074

0.13

0.02

 

4

GRMZM2G171605

4

186590896

PZE-104110312

A,G

1.74E-07

0.004

0.18

0.03

4'phosphopante theinyl transferase

5

GRMZM2G005308

6

160053330

PZE-106113397

A,G

1.96E-05

0.074

0.24

0.02

U3 small nucleolar ribonucleoprotein

6

GRMZM2G151651

7

33447828

SYNGENTA5726

G,A

4.58E-08

0.002

0.08

0.03

 

7

GRMZM2G100107

7

91683817

SYN16533

G,A

2.07E-05

0.074

0.44

0.02

SANT associated

8

GRMZM2G100107

7

91684720

PZE-107044973

A,G

1.74E-05

0.074

0.43

0.02

SANT associated

9

Intergenic

7

91686972

PZE-107044977

C,A

1.43E-05

0.074

0.44

0.02

 

10

Intergenic

7

92335869

PZE-107045210

G,A

3.64E-06

0.034

0.21

0.02

 

11

Intergenic

8

37657703

PZE-108032335

G,A

1.43E-05

0.074

0.36

0.02

 

12

GRMZM2G158141

10

91956279

PZE-110049068

G,A

1.28E-05

0.074

0.09

0.02

Antifreeze protein

  1. *False discovery rate-corrected p-values
  2. aMinor allele frequency