Identification of stable QTLs for vegetative and reproductive traits in the microvine (Vitis vinifera L.) using the 18 K Infinium chip

Houel, Cléa; Chatbanyong, Ratthaphon; Doligez, Agnès; Rienth, Markus; Foria, Serena; Luchaire, Nathalie; Roux, Catherine; Adivèze, Angélique; Lopez, Gilbert; Farnos, Marc; Pellegrino, Anne; This, Patrice; Romieu, Charles; Torregrosa, Laurent

doi:10.1186/s12870-015-0588-0

Table 3 Statistically significant repeated QTLs, identified under at least two different growing conditions

From: Identification of stable QTLs for vegetative and reproductive traits in the microvine (Vitis vinifera L.) using the 18 K Infinium chip

Trait	Year	Growing condition^a	Genetic map	Linkage group	QTL peak position (cM)	Interval position (cM)		LOD	% of variance
LA	2012	outdoors	Ugni blanc flb	4	70.9	50	80.1	3	10
LA	2011	outdoors	Ugni blanc flb	4	72.4	69.3	80.1	3.6	17
LA	2014	hot	Ugni blanc flb	4	72.4	69.3	77	4.8	16
LA	2011	greenhouse	Ugni blanc flb	4	77.1	69	80.1	5.1	14
LA	2013	hot	Picovine	19	30.9	26.2	30.9	2.9	10
LA	2014	hot	Picovine	19	30.9	25.5	30.9	3.5	12
BWG	2013	hot	Ugni blanc flb	7	39.0	33.3	49	4.7	25
BWG	2014	cool	Ugni blanc flb	7	46.0	43	49.6	13.1	43
BWG	2013	cool	Ugni blanc flb	7	46.5	44.2	48	7	37
BWG	2013	outdoors	Ugni blanc flb	7	48.0	45	52	7.4	26
BWG	2014	hot	Ugni blanc flb	7	48.0	45	53	12.1	44
BWG	2011	outdoors	Ugni blanc flb	7	50.0	45	53.5	6.6	33
BWG	2012	outdoors	Ugni blanc flb	7	51.0	46.5	60	6.6	28
BWM	2011	outdoors	Ugni blanc flb	7	48.0	45	53	9.9	42
BWM	2013	outdoors	Ugni blanc flb	7	51.0	47	56	7.6	17
NB	2014	hot	Ugni blanc flb	7	47.0	42	66	4.9	20
NB	2014	cool	Ugni blanc flb	7	51.2	42	64.4	4.7	18
NB	2011	outdoors	Ugni blanc flb	7	72.9	61	75	5	24
NB	2013	outdoors	Ugni blanc flb	7	72.9	68	77	5.6	18
NB	2013	hot	Ugni blanc flb	14	53.7	46	59.4	3.2	18
NB	2013	outdoors	Ugni blanc flb	14	59.3	55.6	63	4.3	13
NC	2012	outdoors	Ugni blanc flb	7	52.7	49.2	54.4	4.1	20
NC	2013	outdoors	Ugni blanc flb	7	52.7	49.2	73	3.3	13
NC	2011	outdoors	Ugni blanc flb	7	57.1	51	63	5.2	25
NS	2013	hot	Ugni blanc flb	7	48.0	46	51	16.2	63
NS	2013	cool	Ugni blanc flb	7	49.0	46	53	9.9	48
NS	2013	outdoors	Ugni blanc flb	7	51.0	50	52.7	35.2	76
NS	2012	outdoors	Ugni blanc flb	7	52.0	50	53.5	25.3	71
ToAG	2012	outdoors	Picovine	5	11.3	0	17.8	3.4	6
ToAG	2013	outdoors	Picovine	5	0	0	18.8	3.1	12
TaG	2013	hot	Ugni blanc flb	4	41.3	40	45	7.6	31
TaG	2011	outdoors	Ugni blanc flb	4	41.5	41	49	7.6	33
TaG	2012	outdoors	Ugni blanc flb	4	47.6	44.1	51	3.8	12
TaG	2013	cool	Ugni blanc flb	7	41.0	20.1	51	7	35
TaG	2013	hot	Ugni blanc flb	7	42.0	32	49	5.3	20
TaG	2013	outdoors	Ugni blanc flb	7	49.2	35.1	52.7	3	12
TaG	2012	outdoors	Ugni blanc flb	7	54.4	44	57	8.1	29
TOG	2013	cool	Ugni blanc flb	7	43.0	37.7	49	5	30
TOG	2013	outdoors	Ugni blanc flb	7	49.0	43	52	3.8	14
TOG	2013	hot	Ugni blanc flb	7	60.0	47	65	4.3	25
MOG	2013	cool	Ugni blanc flb	7	44.0	37.7	49	4.8	30
MOG	2013	outdoors	Ugni blanc flb	7	49.0	43	52	3.5	14
MOG	2013	hot	Ugni blanc flb	7	61.0	48	64.1	4.3	25
MTG	2013	cool	Ugni blanc flb	7	43.0	37.7	49	5.1	31
MTG	2013	outdoors	Ugni blanc flb	7	49.0	43	52	3.3	13
MTG	2012	outdoors	Ugni blanc flb	7	54.4	49.2	57	7.6	32
MTG	2011	outdoors	Ugni blanc flb	7	57.1	42	66	4.7	25
MTG	2013	hot	Ugni blanc flb	7	61.0	47	65	4.3	25

Italic setting indicates the maximum and minimum limits of QTL confidence intervals for a given trait identified under different environments
The stable QTLs, identified in at least half of the environments studied, are displayed in bold
^ahot and cool growth conditions correspond to the two conditions in controlled growth rooms during the thermal stress experiment

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