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Fig. 1 | BMC Plant Biology

Fig. 1

From: Complete chloroplast genome sequence of MD-2 pineapple and its comparative analysis among nine other plants from the subclass Commelinidae

Fig. 1

Syntenic dotplot generated by MUMmer [96] based on nucmer alignment between the contig produced by MIRA (a) before rearrangement and (b) after rearrangement to the T. latifolia chloroplast genome as the reference. The initial contig produced by MIRA had a different start as compared to conserved chloroplast structure such as the T. latifolia and it was in overlap to its ends which was the inverted repeat region. In addition, the SSC was in inverse as compared to the reference due to the uncertainty in placing the first copy of the repeated sequence flanking the SSC

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BMC Plant Biology

ISSN: 1471-2229

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