Table 5 Known QTLs/ genes and GO terms underlying the major QTLs
From: Discovery and mapping of genomic regions governing economically important traits of Basmati rice
Trait | Chr. | QTLs | Marker interval | Total no. of genes | No. gene annotated | Annotated genes (%) | No. significant GO terms | Significant GO terms (% | Known QTLs/Genes | Gene function |
|---|---|---|---|---|---|---|---|---|---|---|
Plant Height | 1 | qPH1.1 | RM302-RM11968 | 534 | 528 | 98.88 | 92 | 17.42 | sd1 | Gibberellin- 20 oxidase 2 |
Filled Grains | 1 | qFG1.1 | RM11968-RM14 | 266 | 265 | 99.62 | 0 | 0.00 | Â | Â |
Grain Length/LB Ratio | 3 | qGL3.1/qLB3.1 | RM353-JL14 | 204 | 201 | 98.53 | 1 | 0.50 | qGL-3, kl3.1,qGL-3A, GS3, qLWR3 | GS3-Putative transmembrane protein |
Grain Length/Breadth/LB Ratio | 5 | qGL5.1/qGB5.1/qLB5.1/qER5.1 | RM430-RM18600 | 28 | 24 | 85.71 | 0 | 0.00 | Â | Â |
Alkali Spreading Value | 6 | qASV6.1 | RM276-RM527 | 242 | 209 | 86.36 | 0 | 0.00 | qGT-6 | soluble starch synthase II-3 |
Amylose content | 4 | qAC4.1 | RM280-RM127 | 61 | 56 | 91.80 | 9 | 16.07 | Â | Â |
Aroma | 8 | qARM8.1 | RM404-RM483 | 88 | 87 | 98.86 | 0 | 0.00 | Fgr | Betain aldehyde dehydrogenase-2 |
Chalkiness | 4 | qCHK4.1 | RM564-RM348 | 1355 | 1181 | 87.16 | 52 | 4.40 | Â | Â |