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Table 4 Highly abundant proteins of the trichome-depleted compared to the trichome-enriched sample material

From: Proteomic analysis of Artemisia annua – towards elucidating the biosynthetic pathways of the antimalarial pro-drug artemisinin

Gi number EmPAI quotienta Acc. number (no taxonomy) Protein name (no taxonomy) Acc. number (Tax.: Artemisia) Protein name (Tax.: Artemisia)
259558480 0.14 CAE82295.1 Catalase [Homogyne alpina]   
259720159 0.20 AFK36692.1 Unknown [Medicago truncatula]   
259732783 0.27 XP_004140097.1 Ribosome-recycling factor, chloroplastic-like [Cucumis sativus]   
259539861 0.33 ADG96009.1 Beta-1,3-glucanase PR2 [Chrysanthemum x morifolium]   
259732073 0.34 YP_007353779.1 Component of cytochrome b6/f complex (chloroplast) [Chrysanthemum x morifolium] YP_007624808.1 Cytochrome f (chloroplast) [Artemisia frigida]
259542667 0.35 P29790.1 ATP synthase gamma chain, chloroplastic   
259550993 0.37 XP_003547929.1 Ferredoxin--NADP reductase, leaf isozyme, chloroplastic-like isoform 1 [Glycine max] AFO64618.1 Cytochrome P450 reductase [Artemisia annua]
259863294 0.38 NP_193769.1 Putative elongation factor Tu [Arabidopsis thaliana]   
259530332 0.40 P00290.1 Plastocyanin   
259532611 0.42 XP_002271791.1 Photosystem II 10 kDa polypeptide, chloroplastic [Vitis vinifera]   
259544910 0.43 ABC41657.1 Carbonic anhydrase 2 [Flaveria pringlei]   
259533513 0.43 AAO42615.1 Ferredoxin [Helianthus annuus]   
259535874 0.43 XP_002299232.1 Predicted protein [Populus trichocarpa]   
259553333 0.44 XP_004228903.1 Photosystem II CP47 chlorophyll apoprotein-like [Solanum lycopersicum] YP_007624821.1 Photosystem II P680 chlorophyll A apoprotein (chloroplast) [Artemisia frigida]
259529761 0.44 BAL14665.1 Elongation factor 1-alpha [Chrysanthemum seticuspe f. boreale] ACP28182.1 Elongation factor 1-alpha [Artemisia annua]
259529664 0.49 ACO35888.1 Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [Ageratina adenophora] ABJ74187.1 Chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [Artemisia annua]
259734867 0.49 CBI19198.3 Unnamed protein product [Vitis vinifera]   
259531744 0.49 P46486.1 Photosystem I reaction center subunit III, chloroplastic   
259542148 0.53 BAA04633.1 PSI-H precursor [Nicotiana sylvestris]   
259563039 0.54 ABW80752.1 Chloroplast ribulose 1,5-bisphosphate carboxylase/oxygenase activase [Flaveria bidentis]   
  1. Please note: BLASTx searches were used to find protein homologues in other species without taxonomy restriction (columns 3 & 4) and with taxonomy restriction to Artemisia (columns 5 & 6). aThis is the quotient of the emPAI values of the merged trichome-enriched samples divided by the emPAI values of the merged trichome-depleted samples. Only contigs identified in all triplicates were considered.