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Table 4 Highly abundant proteins of the trichome-depleted compared to the trichome-enriched sample material

From: Proteomic analysis of Artemisia annua – towards elucidating the biosynthetic pathways of the antimalarial pro-drug artemisinin

Gi number

EmPAI quotienta

Acc. number (no taxonomy)

Protein name (no taxonomy)

Acc. number (Tax.: Artemisia)

Protein name (Tax.: Artemisia)

259558480

0.14

CAE82295.1

Catalase [Homogyne alpina]

  

259720159

0.20

AFK36692.1

Unknown [Medicago truncatula]

  

259732783

0.27

XP_004140097.1

Ribosome-recycling factor, chloroplastic-like [Cucumis sativus]

  

259539861

0.33

ADG96009.1

Beta-1,3-glucanase PR2 [Chrysanthemum x morifolium]

  

259732073

0.34

YP_007353779.1

Component of cytochrome b6/f complex (chloroplast) [Chrysanthemum x morifolium]

YP_007624808.1

Cytochrome f (chloroplast) [Artemisia frigida]

259542667

0.35

P29790.1

ATP synthase gamma chain, chloroplastic

  

259550993

0.37

XP_003547929.1

Ferredoxin--NADP reductase, leaf isozyme, chloroplastic-like isoform 1 [Glycine max]

AFO64618.1

Cytochrome P450 reductase [Artemisia annua]

259863294

0.38

NP_193769.1

Putative elongation factor Tu [Arabidopsis thaliana]

  

259530332

0.40

P00290.1

Plastocyanin

  

259532611

0.42

XP_002271791.1

Photosystem II 10 kDa polypeptide, chloroplastic [Vitis vinifera]

  

259544910

0.43

ABC41657.1

Carbonic anhydrase 2 [Flaveria pringlei]

  

259533513

0.43

AAO42615.1

Ferredoxin [Helianthus annuus]

  

259535874

0.43

XP_002299232.1

Predicted protein [Populus trichocarpa]

  

259553333

0.44

XP_004228903.1

Photosystem II CP47 chlorophyll apoprotein-like [Solanum lycopersicum]

YP_007624821.1

Photosystem II P680 chlorophyll A apoprotein (chloroplast) [Artemisia frigida]

259529761

0.44

BAL14665.1

Elongation factor 1-alpha [Chrysanthemum seticuspe f. boreale]

ACP28182.1

Elongation factor 1-alpha [Artemisia annua]

259529664

0.49

ACO35888.1

Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [Ageratina adenophora]

ABJ74187.1

Chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [Artemisia annua]

259734867

0.49

CBI19198.3

Unnamed protein product [Vitis vinifera]

  

259531744

0.49

P46486.1

Photosystem I reaction center subunit III, chloroplastic

  

259542148

0.53

BAA04633.1

PSI-H precursor [Nicotiana sylvestris]

  

259563039

0.54

ABW80752.1

Chloroplast ribulose 1,5-bisphosphate carboxylase/oxygenase activase [Flaveria bidentis]

  
  1. Please note: BLASTx searches were used to find protein homologues in other species without taxonomy restriction (columns 3 & 4) and with taxonomy restriction to Artemisia (columns 5 & 6). aThis is the quotient of the emPAI values of the merged trichome-enriched samples divided by the emPAI values of the merged trichome-depleted samples. Only contigs identified in all triplicates were considered.