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Table 3 Highly abundant proteins of the trichome-enriched compared to the trichome-depleted sample material

From: Proteomic analysis of Artemisia annua – towards elucidating the biosynthetic pathways of the antimalarial pro-drug artemisinin

Gi number EmPAI quotienta Access. number (no taxonomy) Protein name (no taxonomy) Access. number (Tax.: Artemisia) Protein name (Tax.: Artemisia)
259726479 6.42 ACZ51443.1 Peroxidase protein [Mikania micrantha] AAO45182.1 Peroxidase 1 [Artemisia annua]
259544254 5.70 XP_002285593.1 Aspartic proteinase nepenthesin-2 [Vitis vinifera]   
259560512 4.79 Q9XIV8.1 Peroxidase N1 AAO45182.1 Peroxidase 1 [Artemisia annua]
259867266 3.86 XP_004135957.1 Photosystem II stability/assembly factor HCF136, chloroplastic-like [Cucumis sativus]   
259537187 3.76 XP_004251245.1 Elongation factor 1-beta 1-like [Solanum lycopersicum]   
259859266 3.73 XP_003538726.1 Thylakoid lumenal protein At1g12250, chloroplastic-like [Glycine max]   
259714573 3.08 XP_002523024.1 Amino acid binding protein, putative [Ricinus communis]   
259551155 2.97 CAH17986.1 Peroxidase POA1 [Capsicum annuum] AAO45182.1 Peroxidase 1 [Artemisia annua]
259554365 2.59 ABK92641.1 Unknown [Populus trichocarpa]   
259530226 2.35 O04287.1 Peptidyl-prolyl cis-trans isomerase FKBP12   
259724484 2.13 CAA81073.1 H-protein [Flaveria cronquistii]   
259543684 2.06 ABV26711.1 Cyclophilin [Gerbera hybrid cultivar]   
259527950 1.89 AAD11576.1 Lectin 3 [Helianthus tuberosus] AFU82531.1 CjMDR1 protein, partial [Artemisia tridentata]
259557766 1.81 XP_006350796.1 Thylakoid lumenal 15 kDa protein 1, chloroplastic-like [Solanum tuberosum]   
259561193 1.81 AEF01110.1 Cyclophilin 2 [Tagetes patula]   
259539505 1.73 XP_002301776.1 Predicted protein [Populus trichocarpa]   
259534802 1.66 XP_004249062.1 Macrophage migration inhibitory factor homolog isoform 2 [Solanum lycopersicum]   
259531358 1.64 EOY05690.1 Cysteine synthase [Theobroma cacao]   
259732623 1.62 XP_003544567.1 Fructose-bisphosphate aldolase, cytoplasmic isozyme 1-like [Glycine max]   
259544645 1.58 BAD10859.1 Cysteine protease [Aster tripolium]   
  1. Please note: BLASTx searches were used to find protein homologues in other species without taxonomy restriction (columns 3 & 4) and with taxonomy restriction to Artemisia (columns 5 & 6). aThis is the quotient of the emPAI values of the merged trichome-enriched samples divided by the emPAI values of the merged trichome-depleted samples. Only contigs identified in all triplicates were considered.