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Table 3 Highly abundant proteins of the trichome-enriched compared to the trichome-depleted sample material

From: Proteomic analysis of Artemisia annua – towards elucidating the biosynthetic pathways of the antimalarial pro-drug artemisinin

Gi number

EmPAI quotienta

Access. number (no taxonomy)

Protein name (no taxonomy)

Access. number (Tax.: Artemisia)

Protein name (Tax.: Artemisia)

259726479

6.42

ACZ51443.1

Peroxidase protein [Mikania micrantha]

AAO45182.1

Peroxidase 1 [Artemisia annua]

259544254

5.70

XP_002285593.1

Aspartic proteinase nepenthesin-2 [Vitis vinifera]

  

259560512

4.79

Q9XIV8.1

Peroxidase N1

AAO45182.1

Peroxidase 1 [Artemisia annua]

259867266

3.86

XP_004135957.1

Photosystem II stability/assembly factor HCF136, chloroplastic-like [Cucumis sativus]

  

259537187

3.76

XP_004251245.1

Elongation factor 1-beta 1-like [Solanum lycopersicum]

  

259859266

3.73

XP_003538726.1

Thylakoid lumenal protein At1g12250, chloroplastic-like [Glycine max]

  

259714573

3.08

XP_002523024.1

Amino acid binding protein, putative [Ricinus communis]

  

259551155

2.97

CAH17986.1

Peroxidase POA1 [Capsicum annuum]

AAO45182.1

Peroxidase 1 [Artemisia annua]

259554365

2.59

ABK92641.1

Unknown [Populus trichocarpa]

  

259530226

2.35

O04287.1

Peptidyl-prolyl cis-trans isomerase FKBP12

  

259724484

2.13

CAA81073.1

H-protein [Flaveria cronquistii]

  

259543684

2.06

ABV26711.1

Cyclophilin [Gerbera hybrid cultivar]

  

259527950

1.89

AAD11576.1

Lectin 3 [Helianthus tuberosus]

AFU82531.1

CjMDR1 protein, partial [Artemisia tridentata]

259557766

1.81

XP_006350796.1

Thylakoid lumenal 15 kDa protein 1, chloroplastic-like [Solanum tuberosum]

  

259561193

1.81

AEF01110.1

Cyclophilin 2 [Tagetes patula]

  

259539505

1.73

XP_002301776.1

Predicted protein [Populus trichocarpa]

  

259534802

1.66

XP_004249062.1

Macrophage migration inhibitory factor homolog isoform 2 [Solanum lycopersicum]

  

259531358

1.64

EOY05690.1

Cysteine synthase [Theobroma cacao]

  

259732623

1.62

XP_003544567.1

Fructose-bisphosphate aldolase, cytoplasmic isozyme 1-like [Glycine max]

  

259544645

1.58

BAD10859.1

Cysteine protease [Aster tripolium]

  
  1. Please note: BLASTx searches were used to find protein homologues in other species without taxonomy restriction (columns 3 & 4) and with taxonomy restriction to Artemisia (columns 5 & 6). aThis is the quotient of the emPAI values of the merged trichome-enriched samples divided by the emPAI values of the merged trichome-depleted samples. Only contigs identified in all triplicates were considered.