Table 5 Shortlist of differentially expressed transcripts putatively coding for transcription factors and transcriptional regulators. Transcripts with a known Arabidopsis homolog were selected according the following criteria: transcript is either specific of a single cluster and is stage-specific or belongs to TF families with well characterized roles in plant development

A

Contig20395

Vitis_vinifera_ GSVIVP00000629001

MYB_DNA binding/MYB

AT5G57620

MYB36

MYB domain protein 36

24.2

0

0

0

0

1

A

Contig14583

Vitis_vinifera_ GSVIVP00024505001

B3/ARF

AT5G60450

ARF4

Auxin response factor 4

21.6

0

0

0

0

1

C

Contig20996

Oryza_sativa_subsp._Indica_OsIBCD010288

MYB_DNA binding/MYB-related

AT5G66390

PRX72

Peroxidase superfamily protein

0

0

16.2

0

0

1

F

Contig14504

Oryza_sativa_subsp._japonica_LOC_Os11g45530.1

FAR1/FAR1

AT1G76320

FRS4, CPD25

FAR1-related sequence 4

0

0

0

0

23.2

1

A

Contig23988

Carica_papaya_emv.TU.supercontig_187.28

KNOX1/HB

AT5G25220

KNAT3

KNOTTED1-like homeobox gene 3

35.6

0.8

3.8

11.6

13.8

0.54

B

Contig17627

Vitis_vinifera_ GSVIVP00005632001

AT5G11060

KNAT4

KNOTTED1-like homeobox gene 4

1.2

34

27.4

5.6

2

0.48

E

Contig24728

Carica_papaya_emv.TU.supercontig_996.1

AP2/AP2-AREBP DUF260/LOB

AT4G25140

OLEO1

Oleosin 1

0

0

3

69.2

58.5

0.98

E

Contig20473

Vitis_vinifera_ GSVIVP00016010001

0

0

8.2

428.2

192.4

0.99

E

Contig23293

Vitis_vinifera_ GSVIVP00016010001

DUF260/LOB

AT3G27660

OLEO4

Oleosin 4

0

0

0

71

25.8

1

F

Qs-dev_rep_c103605

Vitis_vinifera_ GSVIVP00016010001

0.4

0

0

9.2

39.6

0.80

F

Qs-dev_c70574

Vitis_vinifera_ GSVIVP00016010001

AT5G40420

OLEO2

Oleosin 2

0.2

0

0

2.2

49.8

0.95

B

Contig1681

Carica_papaya_evm.TU.supercontig_3.229

HLH/bHLH

AT5G08130

BIM1

0

22.8

0

1.2

8.8

0.70

D

Contig25637

Vitis_vinifera_GSVIVP00008627001

AT1G01260

JAM2

Jasmonate associated MYC2 like 2

5.2

16.6

7.4

21.6

0

0.43

E

Contig18945

Populus_trichocarpa_180347

AT5G41315

GL3, MYC6.2

Glabra 3, Glabrous 3, MYC6.2

0

4.6

0.6

24.6

23.8

0.90

A

Contig4505

Populus_trichocarpa_218417

NAM/NAC

AT1G56010

NAC1

NAC domain containing protein 1

34.2

2.2

0.6

0

0

0.92

A

Contig23086

Populus_trichocarpa_714847

AT1G34190

NAC017, ANAC017

NAC domain containing protein 17

20.2

0

0

11

4.6

0.56

B

Contig23085

0

27.8

22.8

18.4

7

0.37

A

Contig16452

Vitis_vinifera_ GSVIVP00027622001

AT4G27410

RD26, ANAC072

Responsive to desiccation 26

608.8

184.2

138.6

32

11

0.62

B

Contig25368

Vitis_vinifera_ GSVIVP00000471001

AT4G35580

NTL9

NAC transcription factor-like 9

18.2

42

8.2

14.8

0

0.50

D

Contig26025

Vitis_vinifera_ GSVIVP00027621001

AT3G15510

NAC2

NAC domain containing protein 2

1.2

1.6

12

19.8

0

0.57