Table 2 Read statistics from libraries of cork oak acorn and embryos before and after pre-processing. Embryo tissues isolated from acorns belonging to stages S3-S5 and S8 were termed EM3-EM5 and EM8, respectively
From: Characterization of the cork oak transcriptome dynamics during acorn development
| Â | Non-normalized cDNA libraries | Normalized cDNA libraries | ||||||
|---|---|---|---|---|---|---|---|---|
S1 | S2 | S3 + S4 | S5 | S8 | S1 to S8 | EM3 to EM5 + EM8 | ||
Raw reads | Total | 111,703 | 373,962 | 200,862 | 302,253 | 102,250 | 738,266 | 705,151 |
Range (bp) | 51-1,200 | 52-1,200 | 47-1,200 | 50-1,200 | 55-1,200 | 50-1,201 | 52-1,201 | |
Mode (bp) | 520 | 521 | 519 | 522 | 519 | 516 | 516 | |
Mean (bp) | 503.7 | 515.8 | 510.7 | 524.8 | 513 | 538.5 | 538.7 | |
Size (Mbp) | 47.5 | 162.5 | 86.1 | 133.6 | 44.3 | 314.7 | 298.8 | |
Valid reads | Total | 100,081 | 332,674 | 179,588 | 267,171 | 88,261 | 572,665 | 547,895 |
Range (bp) | 40-568 | 40-579 | 40-571 | 40-565 | 40-546 | 40-576 | 40-616 | |
Mode (bp) | 209 | 213 | 220 | 217 | 214 | 409 | 380 | |
Mean (bp) | 254.1 | 255.2 | 253.6 | 253.5 | 258.1 | 304.3 | 289.2 | |
Size (Mbp) | 27.6 | 92.7 | 49.5 | 74.4 | 25.5 | 201.0 | 183.0 | |