RNA-Seq analysis identifies genes associated with differential reproductive success under drought-stress in accessions of wild barley Hordeum spontaneum

Table 3 Differentially expressed alleles between tolerant and sensitive accessions

Contig	Gene ID	Gene Description	POS	Chr	REF	ALT	QUAL	Effect	B1K0412	B1K3516	B1K3615	B1K4620
morex_contig_53956	MLOC_67950.1	GPI mannosyltransferase	7720	5HL	A	G	243	Moderate	1/1	0/0	1/1	0/0
morex_contig_65282	AK362742	Dehydrogenase/ reductase	3352	6HS	C	T	28.6	Low	1/1	0/0	1/1	0/0
morex_contig_1575714	AK368692	Vacuolar protein	4665	6HL	C	T	80.4	Modifier	1/1	0/0	1/1	0/0
morex_contig_1734244	AK370720	unknown protein	82	7HL	A	T	48.8	High	1/1	0/0	1/1	0/0

Candidate variants after filtering for heterozygosity and including only non-reference alleles associated with drought tolerance. The contig name in the Morex assembly is indicated, the annotated gene (Gene ID), variant position within contig (POS), chromosome arm (Chr), the reference (REF) and alternative (ALT) variants, the phred-quality (QUAL), the variant impact (Effect), and the genotype of each accession

ISSN: 1471-2229