Table 1 Number of reads sequenced and mapped with TopHat

C0

35,588,324

30,268,069(85.05 %)

25,796,713(97.15 %)

756,667(2.85 %)

26,553,380(87.75 %)

24,776(71.35 %)

20,244(81.71 %)

C1

47,221,174

42,718,256(90.46 %)

32,505,159(96.96 %)

1,018,137(3.04 %)

33,523,296(78.49 %)

25,242(72.69 %)

20,515(81.27 %)

C12

34,010,526

29,504,403(86.75 %)

24,478,334(97.21 %)

702,267(2.79 %)

25,180,601(85.37 %)

24,438(70.37 %)

19,843(81.20 %)

Tsh0

36,781,738

32,613,936(88.67 %)

23,386,815(96.45 %)

860,942(3.55 %)

24,247,757(74.37 %)

25,231(72.66 %)

20,155(79.88 %)

Tsh1

35,295,488

31,895,199(90.37 %)

21,154,377(96.32 %)

807,256(3.68 %)

21,961,633(68.87 %)

25,074(72.20 %)

19,775(78.87 %)

Tsh12

37,022,418

33,210,743(89.70 %)

23,125,182(96.68 %)

793,404(3.32 %)

23,918,586(72.04 %)

24,845(71.54 %)

19,698(79.28 %)

C0 (Small RNA)

5,146,411

4,329,523(84.13 %)

1,591,965(38.20 %)

2,575,134(61.80 %)

4,167,099(96.25 %)

C1 (Small RNA)

6,430,561

5,210,088(81.02 %)

2,287,038(45.28 %)

2,764,182(54.72 %)

5,051,220(96.95 %)

C12 (Small RNA)

6,841,937

4,584,516(67.01 %)

1,438,066(32.84 %)

2,941,450(67.16 %)

4,379,516(95.53 %)

Tsh0 (Small RNA)

4,375,096

3,355,947(76.71 %)

757,007 (26.23 %)

2,128,856(73.77 %)

2,885,863(85.99 %)

Tsh1 (Small RNA)

4,459,693

3,635,142(81.51 %)

935,282(29.92 %)

2,190,299(70.08 %)

3,125,581(85.98 %)

Tsh12 (Small RNA)

5,089,855

4,202,130(82.56 %)

1,011,253(27.90 %)

2,613,036(72.10 %)

3,624,289(86.25 %)