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Table 6 Significant functions of DEGs regulated by both gs3 and qgl3

From: The additive effects of GS3 and qGL3 on rice grain length regulation revealed by genetic and transcriptome comparisons

GO term Description Input BG/Ref p-value FDR
GO:0050896 Response to stimulus 16 1462 1.90E-13 2.10E-11
GO:0006950 Response to stress 13 885 1.50E-12 8.50E-11
GO:0009987 Cellular process 28 8160 1.50E-11 5.60E-10
GO:0008152 Metabolic process 24 7746 1.20E-08 3.40E-07
GO:0044238 Primary metabolic process 21 6775 1.90E-07 4.30E-06
GO:0065007 Biological regulation 12 2280 1.00E-06 1.90E-05
GO:0007165 Signal transduction 7 604 1.70E-06 2.80E-05
GO:0044237 Cellular metabolic process 19 6475 2.40E-06 3.40E-05
GO:0008219 Cell death 6 429 3.50E-06 4.00E-05
GO:0016265 Death 6 429 3.50E-06 4.00E-05
GO:0016310 Phosphorylation 8 1080 7.60E-06 6.80E-05
GO:0009719 Response to endogenous stimulus 5 277 7.30E-06 6.80E-05
GO:0019538 Protein metabolic process 12 2770 7.50E-06 6.80E-05
GO:0006796 Phosphate metabolic process 8 1206 1.70E-05 0.00013
GO:0006793 Phosphorus metabolic process 8 1206 1.70E-05 0.00013
GO:0006468 Protein amino acid phosphorylation 7 887 2.00E-05 0.00014
GO:0043687 Post-translational protein modification 8 1236 2.00E-05 0.00014
GO:0043170 Macromolecule metabolic process 16 5520 2.60E-05 0.00016
GO:0044267 Cellular protein metabolic process 10 2166 3.00E-05 0.00018
GO:0006464 Protein modification process 8 1359 3.90E-05 0.00023
GO:0043412 Macromolecule modification 8 1406 5.00E-05 0.00027
GO:0044260 Cellular macromolecule 14 4801 9.40E-05 0.00049
GO:0050789 Regulation of biological process 9 2112 0.00015 0.00073
GO:0016043 Cellular component organization 5 618 0.00031 0.0015
GO:0050794 Regulation of cellular process 8 1964 0.00048 0.0022
GO:0009058 Biosynthetic process 10 3129 0.0006 0.0026
GO:0001883 Purine nucleoside binding 15 1171 1.40E-13 4.80E-12
GO:0001882 Nucleoside binding 15 1171 1.40E-13 4.80E-12
GO:0030554 Adenyl nucleotide binding 15 1171 1.40E-13 4.80E-12
GO:0017076 Purine nucleotide binding 15 1317 7.30E-13 1.50E-11
GO:0005524 ATP binding 14 1071 8.20E-13 1.50E-11
GO:0032559 Adenyl ribonucleotide binding 14 1074 8.50E-13 1.50E-11
GO:0032555 Purine ribonucleotide binding 14 1218 4.50E-12 5.90E-11
GO:0032553 Ribonucleotide binding 14 1218 4.50E-12 5.90E-11
GO:0000166 Nucleotide binding 15 1686 2.30E-11 2.70E-10
GO:0005488 Binding 27 8681 5.00E-10 5.20E-09
GO:0003824 Catalytic activity 25 8329 8.60E-09 8.20E-08
GO:0004713 Protein tyrosine kinase activity 6 224 8.60E-08 7.50E-07
GO:0005515 Protein binding 11 1789 7.00E-07 5.60E-06
GO:0004871 Signal transducer activity 5 212 2.00E-06 1.40E-05
GO:0060089 Molecular transducer activity 5 212 2.00E-06 1.40E-05
GO:0016740 Transferase activity 12 3496 7.50E-05 0.00049
GO:0004672 Protein kinase activity 7 1102 7.90E-05 0.00049
GO:0016787 Hydrolase activity 10 2556 0.00012 0.00069
GO:0016773 Phosphotransferase activity 7 1238 0.00016 0.0009
GO:0004674 Serine/threonine kinase activity 6 949 0.00028 0.0015
GO:0016301 Kinase activity 7 1464 0.00044 0.0022
GO:0016491 Oxidoreductase activity 5 1141 0.0045 0.021
GO:0016772 Transferase activity, transferring 7 2197 0.0045 0.021
GO:0005886 Plasma membrane 9 494 1.00E-09 4.50E-08
GO:0016020 Membrane 12 4882 0.0016 0.036
  1. GO terms, such as “biological process”, “molecular function” and “cellular component”, were identified using AGRIGO (http://bioinfo.cau.edu.cn/agriGO/index.php) with default significance levels (FDR < 0.05). Input, gene number in input list; BG/Ref, gene number in BG/Ref