Table 1 Predicted candidate litchi-specific miRNAs
Name | Sequence | Len | Unigene | Match site | Str | Normalized abundance | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
0d | 4d | 14d0h | 14d24h | 14d48h | Total | ||||||
lch-miRC1 | TGGGTGAAAGATGCAGCAAAATCT | 24 | lychee_29764 | 294 | + | 72.4 | 53.5 | 53.6 | 103.8 | 130.9 | 414.2 |
lch-miRC2 | TTCGATTCGAACCCAGAGATGTCT | 24 | lychee_3356 | 8439 | + | 28.8 | 29.4 | 63.8 | 53.1 | 41.6 | 216.7 |
lch-miRC3 | TTGTGGTGCTATTGTTTCTCCTCT | 24 | lychee_28612 | 3025 | + | 14.9 | 21.7 | 23.5 | 29.3 | 25.7 | 115.1 |
lch-miRC4 | TTCAAGACAACAACTATTGGCTCT | 24 | lychee_43109 | 2259 | + | 47.1 | 26.4 | 79.6 | 82.7 | 34.8 | 270.7 |
lch-miRC5 | CCTGTTGAGCTTGACTCTAGTCT | 23 | lychee_41226 | 539 | − | 21.5 | 6.5 | 12.9 | 20.4 | 5.3 | 66.6 |
lch-miRC6 | CGAAAAGAACTCTGACTGGTCT | 22 | lychee_57528 | 1330 | − | 18.1 | 5.7 | 35.5 | 40.8 | 7.5 | 107.6 |
lch-miRC7 | ATTTGGTAGTAGCTGAGATTCTCT | 24 | lychee_25799 | 986 | + | 13.1 | 3.4 | 6.8 | 19.9 | 3.3 | 46.6 |
lch-miRC8 | CTATCAAACGATGATTGTTGGTCT | 24 | lychee_32974 | 83 | − | 2.0 | 3.1 | 9.1 | 8.1 | 1.3 | 23.6 |
lch-miRC9 | ATTAAAGGAAGAAAAAGGACCTCT | 24 | lychee_2125 | 101 | − | 7.4 | 0.5 | 0.0 | 10.3 | 1.0 | 19.2 |
lch-miRC10 | TGTTGAGCTTGACTCTAGTCT | 21 | lychee_41226 | 539 | − | 12.5 | 4.7 | 7.7 | 10.3 | 3.3 | 38.6 |
lch-miRC11 | CGGAGAAGGGCAATTACTCATTCT | 24 | lychee_25026 | 5635 | + | 1.4 | 0.3 | 2.0 | 3.0 | 1.2 | 7.9 |