From: Genetic architecture of variation in heading date among Asian rice accessions
Population | Chromosome | Physical position ofQTL (Mbp) | Marker interval | LOD a | Additive effect b | Dominance effect c | PVE (%) d | Corresponding gene e | Located near gene f |
---|---|---|---|---|---|---|---|---|---|
QZZ | 1 | 0.2–10.8 | RM6887–RM1287 | 5.3 | 1.7 | 0.2 | 20.0 |  |  |
 | 3 | 0.5–5.5 | RM4108–RM5442 | 12.1 | -1.7 | 0.2 | 52.1 |  | Ehd4, DTH3 |
 | 3 | 30.4–35.6 | RM3199–RM3329 | 36.2 | -8.1 | 4.0 | 77.5 | Hd6 | Hd16 |
 | 7 | 7.1–13.4 | RM21251–RM7273 | 32.1 | 10.9 | 8.6 | 89.9 | Ghd7 |  |
 | 7 | 26.8–29.4 | RM1364–RM22164 | 2.4 | 3.3 | -0.1 | 5.7 |  | OsPRR37 |
TUP | 2 | 1.9 | RM7562 | 8.3 | 1.6 | 0.0 | 37.6 | Â | Â |
 | 2 | 6.7–11.3 | RM5897–RM1234 | 6.8 | -1.4 | -0.2 | 26.4 |  |  |
 | 2 | 27.1–30.6 | RM1367–RM3316 | 4.1 | -0.5 | -0.8 | 13.2 |  | DTH2 |
 | 3 | 0.5 | RM4108 | 19.0 | -2.4 | -0.6 | 54.6 |  | Ehd4, DTH3 |
 | 4 | 2.0–11.6 | RM5414–RM16606 | 2.8 | 0.7 | -0.8 | 20.9 |  |  |
 | 5 | 23.9–29.5 | RM3476–RM3286 | 14.6 | -1.3 | 0.4 | 35.0 |  |  |
 | 6 | 24.5–26.0 | RM5957–RM6395 | 5.0 | -0.8 | -0.1 | 22.5 |  |  |
 | 10 | 11.7–17.4 | RM4455–RM5620 | 2.5 | -0.5 | -0.9 | 18.3 |  | Ehd1 |
 | 12 | 20.0–24.4 | RM28305–RM5479 | 8.5 | -0.9 | -0.4 | 19.7 |  |  |
MUH | 3 | 0.5–1.5 | RM4108–RM3372 | 12.6 | -2.0 | 0.3 | 47.6 |  | Ehd4, DTH3 |
 | 5 | 23.9–27.9 | RM3476–RM5784 | 9.5 | -1.9 | 0.4 | 16.1 |  |  |
 | 6 | 8.1–8.8 | RM19725–RM5963 | 26.1 | 4.2 | -1.1 | 67.3 | Hd1 |  |
 | 6 | 15.8–20.3 | RM20023–RM7193 | 20.8 | 4.6 | -0.4 | 66.1 |  |  |
 | 8 | 6.8–10.3 | RM22617–RM3395 | 25.0 | -4.0 | 0.5 | 74.0 | DTH8 |  |
 | 11 | 3.8–8.1 | RM5599–RM3701 | 2.2 | 0.5 | -0.9 | 3.9 |  |  |
BAS | 2 | 11.3–13.5 | RM1234–RM13106 | 4.4 | -0.6 | 0.0 | 9.8 |  |  |
 | 2 | 33.0–35.4 | RM7286–RM3850 | 3.6 | -1.1 | 0.7 | 8.5 |  | DTH2 |
 | 3 | 6.9–10.1 | RM3872–RM14778 | 7.0 | -1.1 | 0.2 | 17.4 |  | Ehd4, DTH3 |
 | 3 | 10.1–14.5 | RM14778–RM6959 | 4.3 | -1.1 | 0.7 | 9.8 |  |  |
 | 3 | 17.4–21.4 | RM1334–RM5488 | 7.9 | -0.9 | -0.4 | 16.7 |  |  |
 | 7 | 29.4 | RM22164 | 21.0 | -3.7 | -0.1 | 69.7 |  | OsPRR37 |
DPZ | 2 | 13.4–18.4 | RM13101–RM1211 | 2.5 | -1.0 | 0.0 | 5.4 |  |  |
 | 2 | 29.3–35.4 | RM6933–RM3850 | 9.2 | -1.1 | 0.3 | 38.3 |  | DTH2 |
 | 6 | 0.2 | RM6467 | 39.5 | -3.6 | -3.3 | 85.2 |  |  |
 | 7 | 13.2–16.2 | RM21433–RM5481 | 10.6 | -4.0 | -0.9 | 42.5 | Ghd7 |  |
 | 7 | 28.1–29.4 | RM22105–RM22164 | 31.6 | -5.0 | 0.0 | 53.4 |  | OsPRR37 |
 | 10 | 17.5–20.7 | RM5620–RM25771 | 5.3 | 0.5 | 0.1 | 18.2 |  | Ehd1 |
 | 12 | 7.1–10.1 | RM27792–RM6973 | 5.7 | -0.6 | -0.1 | 20.1 |  |  |
KMK | 2 | 4.3–9.5 | RM4355–RM12921 | 2.2 | 0.5 | -0.3 | 7.8 |  |  |
 | 2 | 20.1–24.0 | RM1379–RM3515 | 2.1 | 0.5 | 0.2 | 7.3 |  |  |
 | 6 | 8.1 | RM19725 | 34.4 | 4.0 | -0.8 | 81.0 | Hd1 |  |
 | 8 | 3.0–3.7 | RM4955–RM1148 | 9.5 | -1.3 | 0.2 | 45.4 |  |  |
NAB | 2 | 27.1–34.7 | RM1367–RM3789 | 2.2 | -0.6 | 0.1 | 5.5 |  | DTH2 |
 | 3 | 9.9–15.0 | RM1371–RM3204 | 13.4 | -1.6 | 0.2 | 43.6 |  | Ehd4, DTH3 |
 | 5 | 27.9–29.7 | RM5784–RM19218 | 7.0 | -1.0 | 0.2 | 18.7 |  |  |
 | 6 | 0.2–2.2 | RM6467–RM8112 | 10.7 | 1.3 | 0.1 | 29.1 |  | Hd17 |
 | 6 | 8.8–13.0 | RM5963–RM19951 | 30.2 | 5.9 | 0.6 | 79.2 | Hd1 |  |
 | 8 | 5.9 | RM6838 | 5.5 | -1.8 | 0.3 | 7.9 | DTH8 |  |
 | 9 | 14.4–16.7 | RM5657–RM6235 | 2.9 | 0.5 | -0.1 | 4.5 |  |  |
BKH | 3 | 0.5–5.5 | RM4108–RM5442 | 13.9 | -3.8 | -0.5 | 46.2 |  | Ehd4, DTH3 |
 | 5 | 22.3–27.9 | RM3295–RM5784 | 7.1 | -1.3 | -0.2 | 13.3 |  |  |
 | 6 | 0.2–5.2 | RM6467–RM5754 | 18.3 | -2.5 | 0.1 | 59.6 | RFT1, Hd3a | Hd17 |
 | 7 | 13.4–18.4 | RM7273–RM6394 | 16.9 | -2.2 | 0.3 | 60.8 | Ghd7 |  |
 | 8 | 10.3–14.7 | RM3395–RM22896 | 9.4 | 3.4 | 0.6 | 36.6 | DTH8 |  |
KNJ | 5 | 23.9–27.9 | RM3476–RM5784 | 5.7 | -1.8 | -0.2 | 25.7 |  |  |
 | 6 | 16.1–29.8 | RM3615–RM20045 | 15.5 | -4.6 | 1.1 | 31.3 |  |  |
 | 7 | 26.8–29.4 | RM1364–RM22164 | 18.3 | -2.0 | 0.5 | 63.3 |  | OsPRR37 |
 | 9 | 3.4–9.2 | RM23736–RM1328 | 2.7 | -1.0 | 0.3 | 4.4 |  |  |
BLE | 3 | 0.5 | RM4108 | 20.1 | -2.8 | -0.5 | 65.9 | Â | Ehd4, DTH3 |
 | 3 | 30.4–35.6 | RM3199–RM3329 | 32.1 | -5.2 | 3.4 | 81.2 | Hd6 | Hd16 |
 | 6 | 26.0–28.5 | RM6395–RM1370 | 3.4 | -1.4 | -0.3 | 6.9 |  |  |