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Table 1 ncRNA elements enriched for H3K4me3

From: Genome-wide mapping of histone H3 lysine 4 trimethylation in Eucalyptus grandis developing xylem

ncRNA class

H3K4me3-enriched a

Total annotations

% enriched a

Predicted snoRNAs

31 (59)

175

17.7 (33.7)

Predicted miRNAs

3 (4)

153

2.0 (2.6)

Known miRNAs

1 (2)

60

1.7 (3.3)

Predicted tRNAs

3 (8)

508

0.6 (1.57)

Predicted antisense RNAs

0 (0)

19

0.0 (0.0)

Predicted rRNAs

0 (0)

269

0.0 (0.0)

Predicted spliceosomal snRNA

0 (0)

125

0.0 (0.0)

Predicted sRNAs

0 (0)

80

0.0 (0.0)

  1. aExcludes H3K4me3 peaks overlapping with annotated protein-coding genes. ncRNAs overlapping peaks that also overlap genes are indicated in parenthesis.
  2. Putative targets of H3K4me3-enriched miRNAs are indicated in Additional file 3: Table S3.