Table 2 Gene duplication patterns of plant SDH
From: New insights into the evolutionary history of plant sorbitol dehydrogenase
Species | Chromosome ID | SDH gene ID | SDH class | Duplication pattern | Start position | End position |
|---|---|---|---|---|---|---|
C. sinensis | cs9 | Cs9g16680.1 (orange1.1g017426m) | I | Tandem | 16143063 | 16147624 |
cs9 | Cs9g16690.1 (orange1.1g048013m) | I | Tandem | 16150122 | 16154404 | |
cs9 | Cs9g16660.1 (orange1.1g017793m) | II | WGD or Sgm | 16135216 | 16138066 | |
E. grandis | eg11 | Eucgr. K00213.1 | I | Tandem | 2624187 | 2627945 |
eg11 | Eucgr.K00212.1 | II | Tandem | 2615486 | 2618589 | |
M. domestica | md1 | MDP0000786110 | I | Tandem | 25191824 | 25193641 |
md1 | MDP0000873573 | I | Tandem | 25182502 | 25183812 | |
md1 | MDP0000707567 | I | Tandem | 25180931 | 25182241 | |
md1 | MDP0000515106 | I | Tandem | 25177288 | 25178612 | |
md1 | MDP0000250546 | I | Tandem | 25173127 | 25174375 | |
md1 | MDP0000874667 | I | Tandem | 25157544 | 25158783 | |
md1 | MDP0000638442 | I | WGD or Sgm | 25149134 | 25150444 | |
md1 | MDP0000123910 | I | WGD or Sgm | 25087036 | 25088743 | |
md1 | MDP0000305455 | II | Dispersed | 14150327 | 14159200 | |
md7 | MDP0000188052 | I | Tandem | 23301490 | 23302735 | |
md7 | MDP0000171573 | I | WGD or Sgm | 23281847 | 23283529 | |
md7 | MDP0000188054 | I | Proximal | 23310942 | 23312187 | |
md7 | MDP0000167088 | I | Tandem | 23405354 | 23406795 | |
md7 | MDP0000807470 | I | WGD or Sgm | 23390960 | 23392683 | |
md14 | MDP0000759646 | I | Dispersed | 24043122 | 24044360 | |
P. mume | Pm5 | Pm019393 | I | WGD or Sgm | 23673441 | 23675177 |
Pm6 | Pm021180 | II | Tandem | 7217228 | 7219256 | |
Pm6 | Pm021179 | II | Tandem | 7217228 | 7225304 | |
P. persica | pp2 | ppa007458m|PACid:17644502 | I | WGD or Sgm | 24766424 | 24768515 |
pp4 | ppa007327m|PACid:17655491 | II | WGD or Sgm | 17729024 | 17731238 | |
pp8 | ppa007343m|PACid:17644328 | II | Tandem | 15254677 | 15256888 | |
pp8 | ppa007374m|PACid:17655656 | II | Tandem | 15249947 | 15251989 | |
P .trichocarpa | pt12 | POPTR_0012s13780 | II | WGD or Sgm | 13789342 | 13787442 |
pt12 | POPTR_0012s13790 | I | WGD or Sgm | 13790093 | 13792804 | |
S. tuberosum | st01 | PGSC0003DMC400055323 | I | Dispersed | 1594220 | 1598967 |
st06 | PGSC0003DMC400043871 | II | WGD or Sgm | 24156879 | 24158593 | |
T. cacao | tc03 | Tc03_g019280 | I | WGD or Sgm | 18300080 | 18303115 |
tc03 | Tc03_g019270 | II | WGD or Sgm | 18298897 | 18296706 | |
V. vinifera | vv16 | GSVIVT01010642001 | I | WGD or Sgm | 15653874 | 15651701 |
vv16 | GSVIVT01010646001 | II | Tandem | 15675560 | 15678887 | |
vv16 | GSVIVT01010644001 | II | Tandem | 15666264 | 15664425 |