Skip to main content

Table 3 The combined QTLs for fatty acid contents detected by WinQTLCart_2.5 and QTLNetwork_2.0

From: New insights into the genetic networks affecting seed fatty acid concentrations in Brassica napus

QTL Chr. a Marker interval LOD Additive PV(%) range S b Env. c traits
qA1-1 A1 znS13M26-100-CB10081 3.1 −1.28 4.87 0.3-7.2 W 07D C20:1
qA1-2 A1 CB10097-JICB0313 3.6 0.19 7.15 26.1-28.8 W 07 W1 C18:3
qA1-3 A1 HBr006-ZAAS156a 7.6 0.29 14.64 35.9-37 W 07 W1 C18:3
qA1-4 A1 JICB0455-znS08M15-320 4.8 0.24 11.42 39.8-43.1 W 07 W1 C18:3
qA1-5 A1 em09me21-70-ZAAS165 4.0 0.07 3.43 80.4-84.6 W&Q 07 W1 C18:0
qA2-1 A2 CB10355-Ol10F04 3.1 0.23 6.64 0-18.2 W&Q 09 W3 C18:3
qA2-2 A2 HR-Sp1-210-pX154 3.3 0.31 7.85 56.2-61.5 W 09 W2 C18:3
qA2-3 A2 BRMS-082-HG-FT-A2 3.5 0.32 8.43 61.5-67.3 W 09 W2 C18:3
qA3-1 A3 ZNS13M26-360-HBR160   0.05 2.02 15.7-21.4 Q   C16:0
qA3-2 A3 RA2E11-BRMS-303 3.8 −0.03 4.02 35.9-37.7 W 07 W1 C20:0
qA3-3 A3 CB10271-CNU250 3.3-4.0 −0.52-0.02 3.01-5.66 37.8-43.0 W&Q 07D/07 W1 C16:0/C18:2/C20:0/C22:0
qA3-4 A3 HBr124-KBrB043L02-12 3.1 −0.10 3.22 61.5-63.7 W 07D C16:0
qA3-5 A3 HBr137-CNU270 3.0-3.5 −0.1-3.2 3.52-3.56 67.4-76.1 W&Q 07D/08 W2 C16:0/C18:1
qA3-6 A3 HR-S2-130-HR-Tp4-165 3.8 −0.03 4.78 79.0-86.5 W 07D C22:0
qA4-1 A4 OL11H02C-SR12307I   −1.02 0.39 100.1-104.1 Q   C22:1
qA4-2 A4 znS13M26-220-sN3514f 4.4 0.18 8.86 14.0-23.2 W 08 W2 C16:0
qA4-3 A4 IGF3365B-SN13034   −0.09 5.43 25.7-28.5 Q   C16:0
qA4-4 A4 BRMS-276-HR-C001-A4 4.6 0.06-0.17 1.04-8.02 29.5-35.2 W&Q 08 W2 C16:0/C18:0
qA4-5 A4 niab048-JICB0134 3.4-5.4 −0.03-0.18 5.45-6.26 45.6-60.5 W 07D/07 W1 C16:0/C18:3/C20:0
qA4-6 A4 JICB0134-HBr091 5.22 −0.05_-0.04 0.37-5.44 60.5-67.2 W&Q 07 W1 C18:3/C20:0
qA4-7 A4 HBr202-HS-k02-2 3.2 0.24 6.98 70.4-82.3 W 07D C18:3
qA5-1 A5 BRMS-034-niab017 3.3 0.03 4.18 22.9-29.3 W 07D C22:0
qA5-2 A5 niab013-pX129a 3.8 0.09 4.40 57.9-59.9 W 09D FAS
qA5-3 A5 CNU206-PIE1-6 3.2-3.7 0.09-0.26 4.38-8.17 65.3-79.0 W&Q 09 W3/09D C18:3/FAS
qA5-4 A5 CNU268-HR-Tp4-200 3.1-3.3 −2.3-0.22 1.88-5.96 82.3-89.7 W 07D C18:1/C18:3
qA5-5 A5 IGF3134a-CNU362 3.8 0.23 6.76 95.5-109.3 W 07D C18:3
qA6-1 A6 Ol11F12a-ZAAS92a 4.8 0.29 10.56 0-4.6 W&Q 07D C18:3
qA6-2 A6 HBr201-BRMS-030 3.2 −0.07 3.05 40.7-51.1 W&Q 07D/07 W1 C18:0
qA6-3 A6 HR-Tp3-320-pW217 4.1 0.25 7.51 9.1-14.2 W 07D C18:3
qA7-1 A7 IGF1226l-CNU053b 3 −1.70 1.27 100.2-105.5 W 07D C22:1
qA7-2 A7 HBr030-znS06M34-50 5.4 −0.10 4.36 64.0-70.7 W 07 W1 C16:0
qA7-3 A7 CNU167-CNU044 4.4 −0.09 3.62 71.2-74.8 W 07 W1 C16:0
qA7-4 A7 BRMS-036-HBr021 4.5 −0.10 4.10 74.8-79.8 W 07 W1 C16:0
qA8-1 A8 em10me26-120-JICB0335   −0.04-0.64 4.39-6.42 18.6-26.8 Q   C18:1/C20:0
qA8-2 A8 HBr107-HBr017 8.1 0.07 15.24 27.4-34.0 W 08 W2 C20:0
qA8-3 A8 HBr104-HBr010 4.7 0.05 9.30 36.8-41.9 W 08 W2 C20:0
qA8-4 A8 Na12B05a-HBr031 3.4 −0.22 6.16 48.0-53.3 W 07D C18:3
qA8-5 A8 IGF1108c-sR7178 3.1-59.9 −10.4-9.14 5.7-47.55 57.4-74.6 W&Q 07D/07 W1/08 W2/09D/09 W2/09 W3 C16:0/C18:0/C18:1/C18:2/C18:3/C20:0/C20:1/C22:0/C22:1/FAS
qA8-6 A8 HBr015-HBr026 3.9-33.2 −9.1-8.9 7.7-38.7 75.3-90.4 W 07D/07 W1/08 W2/09 W2 C18:1/C18:2/C20:0/C20:1/C22:0/C22:1/FAS
qA9-1 A9 pW123aH-HBr178 3.6 0.08 2.74 18.3-25.3 W&Q 07 W1 C16:0
qA9-2 A9 CNU296-KBrB073D09-12 3.2 −3.20 4.64 45.5-52.0 W 09 W2 C18:1
qA9-3 A9 HBr197-HBr205 4.5 0.04 5.59 63.5-66.9 W 07D C20:1
qA9-4 A9 HBr205-niab003 4.3 −1.50 6.47 66.9-70.0 W&Q 07 W1 C20:1
qA9-5 A9 IGF1087g-niab127 3.3 0.52 3.32 70.9-71.5 W 07D C18:2
qA9-6 A9 em18me23-380-HBr196 3.9 0.03 4.97 73.2-75.1 W 07D C22:0
qA9-7 A9 pW203b-HBr053 3.4 −0.08 3.96 86.1-95.5 W 09D FAS
qA10-1 A10 RA2E03-HS-b14-1 3.5 0.24 6.29 14.6-18.9 W 07D C18:3
qA10-2 A10 HS-j90-HG4-HG-CO-A10 3.3-4.6 −2.59-0.42 2.0-12.9 18.9-34.2 W&Q 07D/07 W1/09 W2 C18:0/C18:1/C18:3
qA10-3 A10 JICB0551-JICB0573   −0.05 0.28 60.8-71.3 Q   C18:0
qC1-1 C1 EM18ME23-300-CB10258   0.58 3.85 33.0-35.9 Q   C20:1
qC3-1 C3 IGF5376b-HBr014 3.4-15.1 −8.20-8.63 5.0-30.0 118.4-126.1 W 07D/09D C18:1/C22:0/C22:1
qC3-2 C3 HBr014-Ol13C12 4.7-38.6 −9.83-8.86 6.3-37.7 126.1-131.5 W 07D/07 W1/08 W2/09D/09 W2/09 W3 C16:0/C18:0/C18:1/C18:2/C20:0/C20:1/C22:0/C22:1/FAS
qC3-3 C3 IGF0235b-BRMS-093 3.8-64.9 −10.96-9.78 3.0-45.8 133.8-152.3 W&Q 07D/07 W1/08 W2/09D/09 W2/09 W3 C16:0/C18:0/C18:1/C18:2/C20:0/C20:1/C22:0/C22:1/FAS
qC3-4 C3 pX141bE-HBr032 4.9 0.10 4.80 15.7-26.0 W&Q 07D C18:0
qC3-5 C3 pW221-pX141aE 4.4 0.07 3.68 26.5-34.2 W 07D/07 W1 C18:0
qC3-6 C3 HBr211-HBr152 4.2 1.52 6.46 51.7-59.0 W 07 W1 C20:1
qC3-7 C3 Ol11G11b-pW143   −0.05 4.98 80.3-91.5 Q   C20:0
qC3-8 C3 HBr139-CNU099 4.7 −3.10 2.91 94.1-98.8 W 07D C18:1
qC5-3 C5 Ol10B02-JICB0509 3.2 0.10 5.01 30-62.6 W 09 W3 FAS
qC5-1 C5 IGF3112a-em12me21-150 3.5-7.2 −0.06-0.55 3.7-13.9 63.8-82.9 W 07D/08 W2 C18:2/C20:0
qC5-2 C5 em12me21-150-IGF0193C 4.2-4.6 0.28-0.56 3.9-9.8 82.9-88.3 W 07D/09 W3 C18:2/C18:3
qC6-1 C6 HBr025-Na12E01a 5.5 0.24 11.4 74.3-80.8 W 09 W2 FAS
qC6-2 C6 HBr057-HBr047 4.0 −0.21 8.64 91.0-95.4 W 09 W2 FAS
qC6-3 C6 SR12387-EM14ME28-200   −0.57 0.10 41.2-45.3 Q   C22:1
qC7-1 C7 SNRH63-CNU400   −0.13 1.68 18.8-37.2 Q   C18:3
qC8-1 C8 CB10504-sN11670a 3.4 0.36-0.54 3.0-3.65 32.4-46.8 W&Q 07D/09 W3 C18:2/C20:1
qC9-1 C9 CB10064-em20me27-230 6.1 −0.12 6.28 26.3-42.9 W 07 W1 C16:0
qC9-2 C9 EM20ME27-230-HR-TP3-360   0.13 3.83 46.2-50.3 Q   C18:3
qC9-3 C9 BRMS-154-HBr144 5 −0.12 5.31 52.7-61.2 W&Q 07D/07 W1 C16:0
qC9-4 C9 HBr186-SA30 3.1-4.1 −0.14-0.08 3.97-5.4 62.5-74.2 W 07D/08 W2 C16:0/C18:0
qC9-5 C9 S16071-3F3R-sNRG42 3.4 0.07-0.90 0.03-3.3 76.2-82.8 W&Q 07D C18:0/C22:1
qC9-6 C9 HR-Sp1-170-sR12384I 3.6 2.71 3.36 92.7-98.4 W 09 W3 C18:1
  1. aChromosome.
  2. bThe software used to detect QTL. W, WinQTLCart_2.5; Q, QTLNetwork_2.0.
  3. cThe environment in which the QTLs are detected.
  4. The QTL with bold indicates that no candidate genes are located in the confidence interval of this QTL in the present study.