Table 2 Allelic variants of VRN-A1 gene in a selected set of accessions of diploid Triticum species and tetraploid T. dicoccoides
Species (genome) | Accession number | Growth type (Winter/ Spring) | VRN-A1 structural forms * | Alleles** | GenBank Ac.N. | Homologous sequences from GenBank | ||
|---|---|---|---|---|---|---|---|---|
Promoter | Intron 1 | |||||||
Insertion | Deletions | |||||||
0.5Â kb | 1.4Â kb/7.2Â kb | |||||||
T. monococcum (AA) | TRI 1510 | S | VRN-A1 | + | −/− | VRN-A1ins | KM586653 | AY188331 |
TRI 17025 | S | VRN-A1 | - | −/− | vrn-A1vrn2 | -//- | -//- | |
TRI 17212 | S | VRN-A1 | + | −/− | VRN-A1ins | -//- | -//- | |
TRI 17973 | S | VRN-A1 | - | −/− | vrn-A1VRN-2 | -//- | -//- | |
TRI 28871 | S | VRN-A1f | + | −/− | VRN-A1f VRN-A1ins | KM586656 | DQ146421 | |
T. boeoticum (AA) | TRI 17062 | W | VRN-A1 | - | −/− | vrn-A1 | KM586653 | AY188331 |
TRI 17071 | S | VRN-A1h | - | −/− | VRN-A1h | KM586657 | GQ451745 | |
TRI 17072 | S | VRN-A1 | - | −/− | vrn-A1VRN-2 | KM586653 | AY188331 | |
TRI 17098 | S | VRN-A1h | - | −/− | VRN-A1h | KM586657 | GQ451745 | |
TRI 17103 | W | VRN-A1h | - | −/− | VRN-A1h | -//- | -//- | |
TRI 17117 | W | VRN-A1 | - | −/− | vrn-A1 | KM586653 | AY188331 | |
TRI 17164 | W | VRN-A1h | - | −/− | VRN-A1h | KM586657 | GQ451745 | |
T. urartu (AA) | TRI 17174 | W | VRN-A1u | - | +/− | vrn-A1u | KM586659 | GQ482970 |
TRI 17118 | W | VRN-A1u | - | +/− | vrn-A1u | -//- | -//- | |
TRI 17121 | W | VRN-A1u | - | +/− | vrn-A1u | -//- | -//- | |
TRI 17138 | W | VRN-A1u | - | +/− | vrn-A1u | -//- | -//- | |
TRI 17141 | W | VRN-A1u | - | +/− | vrn-A1u | -//- | -//- | |
T. dicoccoides (BBAA) | IG 113301 | W | VRN-A1u’ | - | +/− | vrn-A1u´ | KM586660 | AY747598 |
IG 46273 | W | VRN-A1b | - | +/− | VRN-A1b | KM586654 | AY616461 | |
IG 46306 | W | VRN-A1b | - | +/− | VRN-A1b | -//- | -//- | |
IG 115810 | W | VRN-A1b | - | +/− | VRN-A1b | -//- | -//- | |
IG 46277 | S | VRN-A1d | - | +/− | VRN-A1d | KM586655 | AY616462 | |
IG 46288 | S | VRN-A1d | - | +/− | VRN-A1d | -//- | -//- | |
IG 139189 | S | VRN-A1u’ | - | ?/+ | VRN-A1L | KM586658 | AY747598 | |
IG 46297 | S | VRN-A1u’ | - | ?/+ | VRN-A1L | -//- | -//- | |
k-5198 | S | VRN-A1u’ | - | ?/+ | VRN-A1L | -//- | -//- | |