Table 1 Transcriptomes comparison
Utricularia vulgaris | Utricularia gibba | |
|---|---|---|
Biological source of RNA | Shoots, cultivated under sterile conditions | Shoots and flowers natural conditions |
cDNA library preparation | Oligo dT enrichment normalized library | Oligo dT enrichment without normalization |
inputFile NumReads | 1 405 703 | 817 792 |
numAlignedReads | 1 271 732; 91.5% of total | 707 880; 86.56% of total |
Number of Assembled | 1 151 110 | 638 520 |
Number of Partially assembled | 120 448 | 69 288 |
Number of Singletons | 64 188 | 99 900 |
Number Outlier (e.g. chimeras) | 23 169 | 9967 |
Number of TooShort Reads | 30 086 | 6 |
Number of Isogroups | 19 522 | 13 591 |
Avg Contig Count | 2.6 | 1.4 |
Number With One Contig | 11 168; 57.2% | 11 676; 85.9% |
Avg Isotig Count | 2.1 | 1.2 |
Number With One Isotig | 11 213 | 11 705 |
Number of Isotigs | 41 407 | 16 465 |
Avg Contig Count | 3.4 | 1.6 |
Largest Contig Count | 18 | 13 |
Number With One Contig | 11 168 | 11 676 |
Avg Isotig Size | 1 514 | 705 |
N50 Isotig Size | 1905 | 839 |
Largest Isotig Size | 12 895 | 3 326 |
Number Of Large Contigs | 22 001 | 7 763 |
Avg Large Contig Size | 962 | 819 |
Number Of all Contigs | 51 270 | 19 120 |