|
Biological source of RNA
|
Shoots, cultivated under sterile conditions
|
Shoots and flowers natural conditions
|
|
cDNA library preparation
|
Oligo dT enrichment normalized library
|
Oligo dT enrichment without normalization
|
|
inputFile NumReads
|
1 405 703
|
817 792
|
|
numAlignedReads
|
1 271 732; 91.5% of total
|
707 880; 86.56% of total
|
|
Number of Assembled
|
1 151 110
|
638 520
|
|
Number of Partially assembled
|
120 448
|
69 288
|
|
Number of Singletons
|
64 188
|
99 900
|
|
Number Outlier (e.g. chimeras)
|
23 169
|
9967
|
|
Number of TooShort Reads
|
30 086
|
6
|
|
Number of Isogroups
|
19 522
|
13 591
|
|
Avg Contig Count
|
2.6
|
1.4
|
|
Number With One Contig
|
11 168; 57.2%
|
11 676; 85.9%
|
|
Avg Isotig Count
|
2.1
|
1.2
|
|
Number With One Isotig
|
11 213
|
11 705
|
|
Number of Isotigs
|
41 407
|
16 465
|
|
Avg Contig Count
|
3.4
|
1.6
|
|
Largest Contig Count
|
18
|
13
|
|
Number With One Contig
|
11 168
|
11 676
|
|
Avg Isotig Size
|
1 514
|
705
|
|
N50 Isotig Size
|
1905
|
839
|
|
Largest Isotig Size
|
12 895
|
3 326
|
|
Number Of Large Contigs
|
22 001
|
7 763
|
|
Avg Large Contig Size
|
962
|
819
|
|
Number Of all Contigs
|
51 270
|
19 120
|
