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Table 1 Transcriptomes comparison

From: The transcriptome of Utricularia vulgaris, a rootless plant with minimalist genome, reveals extreme alternative splicing and only moderate sequence similarity with Utricularia gibba

  Utricularia vulgaris Utricularia gibba
Biological source of RNA Shoots, cultivated under sterile conditions Shoots and flowers natural conditions
cDNA library preparation Oligo dT enrichment normalized library Oligo dT enrichment without normalization
inputFile NumReads 1 405 703 817 792
numAlignedReads 1 271 732; 91.5% of total 707 880; 86.56% of total
Number of Assembled 1 151 110 638 520
Number of Partially assembled 120 448 69 288
Number of Singletons 64 188 99 900
Number Outlier (e.g. chimeras) 23 169 9967
Number of TooShort Reads 30 086 6
Number of Isogroups 19 522 13 591
Avg Contig Count 2.6 1.4
Number With One Contig 11 168; 57.2% 11 676; 85.9%
Avg Isotig Count 2.1 1.2
Number With One Isotig 11 213 11 705
Number of Isotigs 41 407 16 465
Avg Contig Count 3.4 1.6
Largest Contig Count 18 13
Number With One Contig 11 168 11 676
Avg Isotig Size 1 514 705
N50 Isotig Size 1905 839
Largest Isotig Size 12 895 3 326
Number Of Large Contigs 22 001 7 763
Avg Large Contig Size 962 819
Number Of all Contigs 51 270 19 120
  1. U. vulgaris and U. gibba transcriptomes assembled by Newbler 2.7.