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Table 3 Differentially expressed proteins in fruit flesh of Temple (Te) versus Murcott (Mu) mandarin hybrid fruit

From: Proteomic and metabolomic analyses provide insight into production of volatile and non-volatile flavor components in mandarin hybrid fruit

Accession Name Species iTRAQ ratio fold change
Stage 1 Stage 2 Stage 3
Te/Mu P value Te/Mu P value Te/Mu P value
gi|11596186 cystatin-like protein Citrus x paradisi 4.041 0.036 0.647 0.002   
gi|118061963 extracellular solute-binding protein, family 5 Roseiflexus castenholzii DSM 13941      0.483 0.047
gi|119367477 putative H-type thioredoxin Citrus cv. Shiranuhi 10.782 0.001 0.404 0.001   
gi|119367479 putative cyclophilin Citrus cv. Shiranuhi    0.588 0.037 2.347 0.002
gi|121485004 cytosolic phosphoglycerate kinase Helianthus annuus 5.535 0.002     
gi|124360080 Galactose mutarotase-like Medicago truncatula      1.724 0.003
gi|125546170 hypothetical protein OsI_14032 Oryza sativa Indica Group    0.561 0.014   
gi|14031067 dehydrin COR15 Citrus x paradisi      2.806 0.000
gi|147809484 hypothetical protein Vitis vinifera    0.608 0.022 0.696 0.065
gi|147836508 hypothetical protein Vitis vinifera      1.630 0.024
gi|147853192 hypothetical protein Vitis vinifera      1.803 0.018
gi|15219028 26.5 kDa class I small heat shock protein-like Arabidopsis thaliana      0.491 0.008
gi|15235730 phosphoenolpyruvate carboxykinase (ATP), putative/PEP carboxykinase, putative/PEPCK, putative Arabidopsis thaliana      1.899 0.034
gi|159471948 U2 snRNP auxiliary factor, large subunit Chlamydomonas reinhardtii    0.255 0.044   
gi|166850556 CTRSFT1-like protein Poncirus trifoliata 3.261 0.011 0.237 0.005   
gi|169160465 phospholipase D alpha Citrus sinensis 4.060 0.000 0.240 0.000 0.573 0.000
gi|17225598 pyruvate decarboxylase Fragaria x ananassa      0.286 0.012
gi|183579873 chitinase Citrus unshiu 1.534 0.012     
gi|192912988 40S ribosomal protein S4 Elaeis guineensis 1.601 0.049     
gi|218202932 14-3-3 protein Dimocarpus longan    0.227 0.016   
gi|221327587 ascorbate peroxidase Citrus maxima 4.863 0.000 0.180 0.049   
gi|2213425 hypothetical protein Citrus x paradisi 0.627 0.000 0.524 0.001   
gi|223949137 unknown Zea mays 5.116 0.003     
gi|224069008 predicted protein Populus trichocarpa 6.992 0.001     
gi|224099429 predicted protein Populus trichocarpa    0.587 0.014 0.316 0.002
gi|224109966 predicted protein Populus trichocarpa    0.476 0.040   
gi|224127346 predicted protein Populus trichocarpa    0.156 0.007 0.641 0.043
gi|224128794 predicted protein Populus trichocarpa    0.298 0.007 0.382 0.022
gi|224135985 predicted protein Populus trichocarpa    0.248 0.006 0.366 0.021
gi|225424861 PREDICTED: hypothetical protein isoform 2 Vitis vinifera      0.536 0.040
gi|225425914 PREDICTED: hypothetical protein Vitis vinifera    0.429 0.002 0.425 0.010
gi|225439785 PREDICTED: hypothetical protein Vitis vinifera    0.441 0.007 0.658 0.023
gi|225441981 PREDICTED: hypothetical protein Vitis vinifera    0.304 0.002 0.568 0.007
gi|225442225 PREDICTED: hypothetical protein Vitis vinifera 9.896 0.015 0.576 0.010 0.571 0.002
gi|225451968 PREDICTED: similar to mangrin Vitis vinifera 4.507 0.040 0.263 0.095   
gi|231586 ATP synthase subunit beta Hevea brasiliensis    0.134 0.004 0.555 0.007
gi|242199340 UDP-glucosyltransferase family 1 protein Citrus sinensis 7.535 0.002 0.394 0.008 0.539 0.030
gi|255539613 phosphoglucomutase, putative Ricinus communis    0.142 0.020   
gi|255543156 conserved hypothetical protein Ricinus communis 7.967 0.000     
gi|255544686 eukaryotic translation elongation factor, putative Ricinus communis    0.424 0.006 0.323 0.008
gi|255550111 heat-shock protein, putative Ricinus communis 3.788 0.043     
gi|255551036 aspartate aminotransferase, putative Ricinus communis      0.599 0.037
gi|255561582 Patellin-3, putative Ricinus communis    0.588 0.017   
gi|255571742 peptidase, putative Ricinus communis    0.275 0.004   
gi|255586766 monodehydroascorbate reductase, putative Ricinus communis    0.429 0.003 0.493 0.001
gi|255641409 unknown Glycine max    0.645 0.021   
gi|255642211 unknown Glycine max 0.521 0.011 0.121 0.001   
gi|255644696 unknown Glycine max 5.914 0.002     
gi|257659867 unnamed protein product Linum usitatissimum    0.329 0.235 0.368 0.047
gi|257675725 unnamed protein product Zea mays 3.832 0.019     
gi|257690969 unnamed protein product Citrus sinensis    0.384 0.002   
gi|257712573 unnamed protein product Brassica napus 9.086 0.011    0.664 0.006
gi|257720002 unnamed protein product Glycine max    0.551 0.001 0.387 0.007
gi|257726687 unnamed protein product Zea mays 1.650 0.035 0.387 0.001   
gi|27462762 malate dehydrogenase Lupinus albus      0.305 0.003
gi|29124973 unknown Populus tremuloides      2.039 0.031
gi|33316389 valencene synthase Citrus sinensis      25.730 0.022
gi|33325127 eukaryotic translation initiation factor 5A isoform VI Hevea brasiliensis      1.914 0.039
gi|33340236 copper/zinc superoxide dismutase Citrus limon 3.706 0.001 0.638 0.004   
gi|37524017 COR15 Citrus clementina x Citrus reticulata 10.311 0.006    2.382 0.010
gi|3790102 pyrophosphate-dependent phosphofructokinase alpha subunit Citrus x paradisi 1.724 0.025    0.554 0.011
gi|40646744 mitochondrial citrate synthase precursor Citrus junos    0.201 0.032 0.553 0.018
gi|4580920 vacuole-associated annexin VCaB42 Nicotiana tabacum    0.209 0.046 0.330 0.007
gi|4704605 glycine-rich RNA-binding protein Picea glauca 4.452 0.009     
gi|530207 heat shock protein Glycine max 4.177 0.045     
gi|544437 Probable phospholipid hydroperoxide glutathione peroxidase Citrus sinensis      3.140 0.039
gi|5764653 NADP-isocitrate dehydrogenase Citrus limon    0.430 0.006 0.437 0.003
gi|6094476 Thiazole biosynthetic enzyme Citrus sinensis    0.228 0.007   
gi|6166140 Elongation factor 1-delta 1 Oryza sativa Japonica Group 7.427 0.045 0.654 0.028   
gi|6225526 Isopentenyl-diphosphate Delta-isomerase I Clarkia breweri    0.562 0.033   
gi|624674 heat shock protein Citrus maxima       
gi|624676 citrate synthase precursor Citrus maxima 2.731 0.020     
gi|62900641 Plastid-lipid-associated protein Citrus unshiu 6.082 0.002 0.289 0.000 0.662 0.022
gi|63333659 beta-1,3-glucanase class III Citrus clementina x Citrus reticulata    0.493 0.141 2.712 0.000
gi|6518112 H + −ATPase catalytic subunit Citrus unshiu 4.754 0.017 0.598 0.007   
gi|6682841 sucrose synthase Citrus unshiu 3.194 0.025 0.632 0.009   
gi|6682843 sucrose synthase Citrus unshiu    0.144 0.008 0.575 0.024
gi|7024451 glycine-rich RNA-binding protein Citrus unshiu 1.886 0.531     
gi|70609690 glutamate decarboxylase Citrus sinensis 3.588 0.025 0.643 0.043   
gi|7269241 UDPglucose 4-epimerase-like protein Arabidopsis thaliana 0.424 0.011 0.158 0.004   
gi|74486744 translation elongation factor 1A-9 Gossypium hirsutum 4.923 0.008     
gi|76573375 triosphosphate isomerase-like protein Solanum tuberosum      0.311 0.000
gi|77417715 SOD Citrus maxima 0.638 0.017 0.118 0.010 0.322 0.013
gi|77540216 triosephosphate isomerase Glycine max      0.514 0.022
gi|77744899 temperature-induced lipocalin Citrus sinensis 4.028 0.018 0.548 0.016   
gi|82623427 glyceraldehyde 3-phosphate dehydrogenase-like Solanum tuberosum    0.661 0.297   
gi|862480 valosin-containing protein Glycine max 1.510 0.029 0.374 0.010   
gi|870794 polyubiquitin Arabidopsis thaliana 4.534 0.005     
gi|90820120 UDP-glucose pyrophosphorylase Cucumis melo 7.835 0.028     
gi|9082317 actin Helianthus annuus 3.959 0.051 0.527 0.001   
gi|9280626 UDP-glucose pyrophosphorylase Astragalus membranaceus 9.821 0.002    1.626 0.022
gi|9757974 polyubiquitin Arabidopsis thaliana    0.585 0.011   
  1. The P value was selected from the most significant one among three biological replications. Additional file 1: Table S2 has the result from all three biological replications. Stage 1 was on December 22, 2008, Stage 2 was on January 30, 2009, and Stage 3 was on March 11, 2009.