Table 4 Target prediction of the miRNA differentially expressed in A. thaliana leaf tissues in response to LPS elicitation
miRNA | Target Acc | miRNA Sequence | Target aligned fragment | Expectation | Target start | Target end | Target description |
|---|---|---|---|---|---|---|---|
miR156a | AT1G27360.1 | TGACAGAAGAGAGTGAGCACC | GUGCUCUCUCUCUUCUGUCA | 2.5 | 1253 | 1272 | Squamosa promoter-binding-like protein |
miR158 | AT1G64100.1 | TCCCAAATGTAGACAAAGCA | UUCUUUGUCUACAUUUGGCA | 2.5 | 477 | 496 | Pentatricopeptide (PPR) repeat protein |
miR159 | AT2G32460.2 | TTTGGATTGAAGGGAGCTCTA | UAGAGCUUCCUUCAAACCAAA | 2.0 | 972 | 992 | Myb domain protein 101, ACC synthase |
miR160 | AT1G77850.1 | TGCCTGGCTCCCTGTATGCCA | CCUGAUGUAAUCACUUUCAA | 0.5 | 1409 | 1429 | ARF10 (Auxin response factor 10) |
miR167 | AT1G30330.1 | TGAAGCTGCCAGCATGATCTA | UGAUCAUUCUGGCAGCUUUG | 2.5 | 3276 | 3296 | ARF6 (Auxin response factor 6) |
miR169 | AT1G17590.1 | TAGCCAAGGATGACTTGCCT | AGGGAAGUCAUCCUUGGCUG | 1.5 | 1233 | 1252 | Nuclear factor Y, subunit A8 |
miR173 | AT2G27400.1 | TTCGCTTGCAGAGAGAAATCAC | UCGUUUCCCUCUGUAAGCGAA | 1.5 | 367 | 388 | Trans-acting siRNA1a primary transcript |
miR393 | AT3G59740.1 | ATCATGCGATCTCTTTGGAT | AUCCAAAGAAGUCGUAUGAU | 2.0 | 794 | 813 | Concanavalin A-like lectin protein kinase |
miR396 | AT3G52910.1 | TTCCACAGCTTTCTTGAACTG | CCGUUCAAGAAAGCCUGUGGAA | 2.0 | 742 | 763 | Growth-regulating factor 4 |
miR398 | AT1G08830.1 | TGTGTTCTCAGGTCACCCCTG | UGUGUUCUCAGGUCACCCCUG | 2.0 | 86 | 106 | Copper superoxide dismutases |
miR408 | AT2G02850.1 | ATGCACTGCCTCTTCCCTGGC | CAAAGGGAAGAGGCAGUGCAU | 1.0 | 98 | 117 | Plantacyanin |
miR472 | AT1G51480.1 | TTTTTCCTACTCCGCCCATACC | GGUAUGGGGGGAGUAGGAAAAA | 1.0 | 799 | 820 | Disease resistance protein (CC-NBS-LRR) |
miR5014 | AT1G05840.1 | TTTTCACTGTTTGATTCGTACACT | GACGAAUCAGACAGUGGAAA | 2.0 | 519 | 538 | Eukaryotic aspartyl protease family protein |
miR5635 | AT3G11430.1 | GTATAAAACGATCATTTCAAGAGT | UUUGAGAUGAUUUUUUUAUAU | 2.5 | 1779 | 1799 | Glycerol-3-phosphate acyltransferase 5 |
miR5642 | AT1G21080.2 | TCGACACCTTGCGGCTAGGAAC | GUUCUUAGCUGAAAAGUGUCGA | 3.0 | 54 | 75 | DNAJ heat shock N-terminal domain-protein |
miR5651 | AT1G72200.1 | GTTCGATCACCATTCGGAGCCT | GAUCCGAACGGUGAUCGGAU | 3.0 | 809 | 828 | RING/U-box superfamily protein |
miR5653 | AT4G02200.1 | AACTCAACCCATGAACCCTAATGA | UCAGUCGGGUUCAUGUAUUGAGUU | 3.0 | 144 | 167 | Drought-responsive family protein |
miR5662 | NP10427100 | ATTTTAGAGGTGACTAT | Â | 1.5 | 508 | 529 | Pentatricopeptide repeat (PPR) protein |
miR5998 | AT3G46230.1 | TGTTTTGTTTTGTGATGTTGGAACAAAT | GUUCUAGCAAAACAAAACAAAACA | 3.0 | 62 | 85 | Heat shock protein 17.4 |
miR775 | AT1G01040.1 | TTCGATGTCTAGCAGTGCCT | UGGAACUGCUAGACAUAGAG | 3.0 | 3217 | 3236 | CAF, SUS1, SIN1, ASU1, EMB76/60 DCL1 |
miR829 | AT5G18560.1 | AGCTCTGATACCAAATGA | UUACCUUGAAGUUUUGAUUUG | 1.5 | 1284 | 1304 | AP2 domain-containing transcription factor |
miR840 | AT5G55930.1 | TTGTTTAGGTCCCTTAGTTTCT | AAGUUAAGGGACUCAAACAA | 3.0 | 2623 | 2642 | Oligopeptide transporter 1 |
miR850 | AT2G43240.1 | AAGATCCGGACTACAACAAAGC | CCUUGUUCUAGUUCGGAUUUU | 3.0 | 129 | 148 | Nucleotide-sugar transporter |