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Table 1 A thaliana homologues of yeast SWR1-C and NuA4 subunits copurify with AtARP4 and AtSWC4

From: AtEAF1 is a potential platform protein for Arabidopsis NuA4 acetyltransferase complex

Purified proteins Homologues Baits Protein complexes Protein domains
Locus ID Name H. sapiens S. cerevisiae At ARP4 At SWC4 SWR1 / NuA4 INO80 SWI / SNF-type HSA ATPase SANT
AT1G18450 AtARP43 BAF53A ARP4 + + + + +    
AT5G22330 RVB1 RUVBL1 RVB1 + + + +     
AT5G67630 RVB21 RUVBL2 RVB2 + + + +     
AT3G49830 RVB22 RUVBL2 RVB2 + + + +     
AT3G24880 AtEAF1A - EAF1 + + +    +   +
AT3G24870 AtEAF1B - EAF1 + + +    +   +
AT4G14385 EAF6 MEAF6 EAF6 + + +      
AT1G79020 EPL1B EPC1 EPL1 + + +      
AT5G64610 HAM11 TIP60 ESA1 + + +      
AT1G54390 ING2 ING3 YNG2 + + +      
AT3G12810 PIE11 p400 SWR1 + + +    + + +
AT2G47210 AtSWC41 DMAP1 SWC4 + + +      +
AT5G45600 AtYAF9A1 GAS41 YAF9 + + +      
AT3G33520 ARP61 ARP6 ARP6   + +      
AT4G37280 MRG11 MRG15 EAF3   + +      
AT1G26470 EAF7 MRGBP EAF7   + +      
AT1G16690 EPL1A EPC1 EPL1   + +      
AT2G36740 SWC21 YL-1 SWC2   + +      
AT5G37055 SWC61 ZNHIT1 SWC6   + +      
AT4G36080 TRA1 TRRAP1 TRA1   + +      
AT2G18000 AtYAF9B1 GAS41 YAF9   + +      
AT3G12380 ARP52 ARP5 ARP5 +    +     
AT5G43500 ARP9 ARP8 ARP8 +    +     
AT3G57300 INO802 INO80 INO80 +    +   + +  
AT5G13950 NFRKB NFRKB - +    +     
AT1G65650 UCH2 UCH37 - +    +     
AT5G16310 UCH2 UCH37 - +    +     
AT4G06634 YY1 YY1 - +    +     
AT3G60830 ARP73 - ARP7 +     +    
AT3G17590 BSH3 INI1 SNF5 +     +    
AT2G46020 BRM3 BRG1/HBRM SNF2/STH1 +     + + +  
AT2G28290 SYD3 BRG1/HBRM SNF2/STH1 +     + + +  
AT3G06010 MINU1 BRG1/HBRM SNF2/STH1 +     + + +  
AT5G19310 MINU2 BRG1/HBRM SNF2/STH1 +     + + +  
AT2G47620 SWI3A3 BAF155/BAF170 SWI3 +     +    +
AT2G33610 SWI3B3 BAF155/BAF170 SWI3 +     +    +
AT1G21700 SWI3C3 BAF155/BAF170 SWI3 +     +    +
AT4G34430 SWI3D3 BAF155/BAF170 SWI3 +     +    +
AT3G01890 SWP73A BAF60A SNF12 +     +    
AT5G14170 SWP73B BAF60A SNF12 +     +    
  1. Proteins copurified with AtARP4 or AtSWC4, fused to Strep-tag, were identified by MS/MS and manually annotated on the basis of sequence- and domain architecture-similarity to yeast and human proteins. The table is limited to proteins that were identified as subunits of chromatin remodeling or histone modifying complexes (multiple subunits were identified). Columns on the right show the distribution of selected protein domains.
  2. 1,2,3Proteins either directly or indirectly linked to Arabidopsis SWR1 and/or NuA4 (1), INO80 (2) or SWI/SNF-type (3) complexes, according to published experimental data.