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Table 1 A thaliana homologues of yeast SWR1-C and NuA4 subunits copurify with AtARP4 and AtSWC4

From: AtEAF1 is a potential platform protein for Arabidopsis NuA4 acetyltransferase complex

Purified proteins

Homologues

Baits

Protein complexes

Protein domains

Locus ID

Name

H. sapiens

S. cerevisiae

At ARP4

At SWC4

SWR1 / NuA4

INO80

SWI / SNF-type

HSA

ATPase

SANT

AT1G18450

AtARP43

BAF53A

ARP4

+

+

+

+

+

   

AT5G22330

RVB1

RUVBL1

RVB1

+

+

+

+

    

AT5G67630

RVB21

RUVBL2

RVB2

+

+

+

+

    

AT3G49830

RVB22

RUVBL2

RVB2

+

+

+

+

    

AT3G24880

AtEAF1A

-

EAF1

+

+

+

  

+

 

+

AT3G24870

AtEAF1B

-

EAF1

+

+

+

  

+

 

+

AT4G14385

EAF6

MEAF6

EAF6

+

+

+

     

AT1G79020

EPL1B

EPC1

EPL1

+

+

+

     

AT5G64610

HAM11

TIP60

ESA1

+

+

+

     

AT1G54390

ING2

ING3

YNG2

+

+

+

     

AT3G12810

PIE11

p400

SWR1

+

+

+

  

+

+

+

AT2G47210

AtSWC41

DMAP1

SWC4

+

+

+

    

+

AT5G45600

AtYAF9A1

GAS41

YAF9

+

+

+

     

AT3G33520

ARP61

ARP6

ARP6

 

+

+

     

AT4G37280

MRG11

MRG15

EAF3

 

+

+

     

AT1G26470

EAF7

MRGBP

EAF7

 

+

+

     

AT1G16690

EPL1A

EPC1

EPL1

 

+

+

     

AT2G36740

SWC21

YL-1

SWC2

 

+

+

     

AT5G37055

SWC61

ZNHIT1

SWC6

 

+

+

     

AT4G36080

TRA1

TRRAP1

TRA1

 

+

+

     

AT2G18000

AtYAF9B1

GAS41

YAF9

 

+

+

     

AT3G12380

ARP52

ARP5

ARP5

+

  

+

    

AT5G43500

ARP9

ARP8

ARP8

+

  

+

    

AT3G57300

INO802

INO80

INO80

+

  

+

 

+

+

 

AT5G13950

NFRKB

NFRKB

-

+

  

+

    

AT1G65650

UCH2

UCH37

-

+

  

+

    

AT5G16310

UCH2

UCH37

-

+

  

+

    

AT4G06634

YY1

YY1

-

+

  

+

    

AT3G60830

ARP73

-

ARP7

+

   

+

   

AT3G17590

BSH3

INI1

SNF5

+

   

+

   

AT2G46020

BRM3

BRG1/HBRM

SNF2/STH1

+

   

+

+

+

 

AT2G28290

SYD3

BRG1/HBRM

SNF2/STH1

+

   

+

+

+

 

AT3G06010

MINU1

BRG1/HBRM

SNF2/STH1

+

   

+

+

+

 

AT5G19310

MINU2

BRG1/HBRM

SNF2/STH1

+

   

+

+

+

 

AT2G47620

SWI3A3

BAF155/BAF170

SWI3

+

   

+

  

+

AT2G33610

SWI3B3

BAF155/BAF170

SWI3

+

   

+

  

+

AT1G21700

SWI3C3

BAF155/BAF170

SWI3

+

   

+

  

+

AT4G34430

SWI3D3

BAF155/BAF170

SWI3

+

   

+

  

+

AT3G01890

SWP73A

BAF60A

SNF12

+

   

+

   

AT5G14170

SWP73B

BAF60A

SNF12

+

   

+

   
  1. Proteins copurified with AtARP4 or AtSWC4, fused to Strep-tag, were identified by MS/MS and manually annotated on the basis of sequence- and domain architecture-similarity to yeast and human proteins. The table is limited to proteins that were identified as subunits of chromatin remodeling or histone modifying complexes (multiple subunits were identified). Columns on the right show the distribution of selected protein domains.
  2. 1,2,3Proteins either directly or indirectly linked to Arabidopsis SWR1 and/or NuA4 (1), INO80 (2) or SWI/SNF-type (3) complexes, according to published experimental data.