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Table 2 Significantly down-regulated transporters in Li 1 and Li 2 mutants regardless of growth conditions

From: RNA-seq analysis of short fiber mutants Ligon-lintless-1 (Li 1 ) and – 2 (Li 2 ) revealed important role of aquaporins in cotton (Gossypium hirsutum L.) fiber elongation

Gene-subgenome/subcategory Li 1 /wt F Li 2 /wt F Li 2 /wt GH Description
Sugars
Gorai.009G135300_D −1.2 −1.3 −1.6 carbohydrate transmembrane transporter
Gorai.010G030700_D −1.5 −1.0 −1.2 sucrose transporter 4
Amino acids
Gorai.006G146500_A −2.1 −1.4 −3.9 aromatic and neutral transporter 1
Gorai.006G146500_D −2.0 −1.6 −2.4 aromatic and neutral transporter 1
Gorai.009G453900_A −1.3 −1.6 −1.7 amino acid permease 7
Gorai.009G321600_A −1.0 −1.0 −1.2 proline transporter 2
Sulphate
Gorai.002G059100_A −1.9 −1.1 −2.5 sulfate transporter 3;4
Gorai.002G059100_D −2.0 −1.2 −2.0 sulfate transporter 3;4
Gorai.009G240100_A −2.8 −1.2 −1.8 STAS domain/Sulfate transporter family
Phosphate
Gorai.008G179500_A −1.5 −1.2 −3.0 EXS (ERD1/XPR1/SYG1) family protein
Gorai.010G140300_A −1.3 −1.3 −1.4 phosphate transporter 1;7
Metabolite transporters at the envelope membrane
Gorai.004G292400_A −1.2 −1.3 −1.2 Nucleotide-sugar transporter family protein
Gorai.008G241700_A −1.9 −1.1 −1.5 Nucleotide-sugar transporter family protein
Gorai.003G043000_D −1.7 −1.7 −1.3 uncoupling protein 5
Metal
Gorai.011G049700_D −3.4 −1.6 −1.8 zinc transporter 10 precursor
Gorai.003G073800_D −2.0 −1.2 −1.1 Cation efflux family protein
Peptides and oligopeptides
Gorai.007G049100_D −1.3 −1.9 −1.4 oligopeptide transporter 7
Gorai.007G049100_A −1.3 −2.1 −1.4 oligopeptide transporter 7
Gorai.009G271300_A −2.4 −1.5 −1.9 peptide transporter 1
Unspecified cations
Gorai.006G257200_D −3.9 −3.4 −3.7 sodium hydrogen exchanger 2
Gorai.002G024800_D −2.4 −2.7 −1.6 magnesium transporter 9
Potassium
Gorai.010G066400_A −1.2 −1.2 −1.7 K+ transporter 1
ABC transporters
Gorai.009G304900_A −1.2 −1.2 −1.3 pleiotropic drug resistance 6
Gorai.002G162300_A −2.6 −1.9 −3.2 non-intrinsic ABC protein 12
Gorai.001G057400_D −1.6 −1.6 −2.1 pleiotropic drug resistance 12
Gorai.003G062100_D −1.5 −1.1 −3.6 ABC-type transporter family protein
Major intrinsic proteins
Gorai.004G001400_D −3.7 −2.9 −5.1 plasma membrane intrinsic protein 2;4
Gorai.002G002500_A −2.3 −1.9 −2.5 plasma membrane intrinsic protein 3
Gorai.002G002500_D −2.0 −1.6 −2.1 plasma membrane intrinsic protein 3
Gorai.002G248400_D −3.1 −2.6 −2.4 plasma membrane intrinsic protein 2
Gorai.002G248400_A −1.9 −1.7 −2.1 plasma membrane intrinsic protein 2
Gorai.004G212800_A −1.3 −1.2 −1.9 plasma membrane intrinsic protein 1;4
Gorai.004G212800_D −1.4 −1.1 −1.8 plasma membrane intrinsic protein 1;4
Gorai.011G098100_D −3.1 −1.9 −3.4 plasma membrane intrinsic protein 3
Gorai.011G098100_A −2.9 −1.6 −1.7 plasma membrane intrinsic protein 3
Gorai.013G265400_D −2.4 −1.3 −2.1 tonoplast intrinsic protein 1;3
Gorai.013G265400_A −2.1 −1.4 −1.9 tonoplast intrinsic protein 1;3
Gorai.002G245900_A −2.7 −2.4 −3.4 gamma tonoplast intrinsic protein
Gorai.003G136600_A −2.9 −2.7 −3.2 tonoplast intrinsic protein 1;3
Gorai.007G078800_A −2.3 −1.2 −2.5 NOD26-like intrinsic protein 4;2
Calcium
Gorai.013G196000_D −1.4 −1.3 −1.4 Sodium/calcium exchanger family protein
Miscelleneous
Gorai.003G000900_D −3.2 −2.9 −4.0 Auxin efflux carrier family protein
Gorai.003G000900_A −4.8 −3.9 −3.9 Auxin efflux carrier family protein
Gorai.008G124800_D −1.1 −1.0 −1.4 cyclic nucleotide gated channel 1
Gorai.007G212500_A −1.3 −2.3 −2.2 MATE efflux family protein
Gorai.007G212500_D −1.7 −2.8 −1.8 MATE efflux family protein
Gorai.002G230300_D −1.4 −1.8 −1.9 MATE efflux family protein
Gorai.001G084300_D −1.9 −2.2 −2.6 MATE efflux family protein
Gorai.003G066500_A −4.0 −3.1 −2.7 phosphoglyceride transfer family protein
Gorai.002G017400_A −2.1 −1.6 −3.0 Secretory carrier membrane protein
Gorai.002G017400_D −1.2 −1.3 −1.9 Secretory carrier membrane protein
  1. Numbers represent the log base 2 ratio of mutants to wild-type expression; F, field grown plants; and GH, greenhouse grown plants.