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Table 2 Significantly down-regulated transporters in Li 1 and Li 2 mutants regardless of growth conditions

From: RNA-seq analysis of short fiber mutants Ligon-lintless-1 (Li 1 ) and – 2 (Li 2 ) revealed important role of aquaporins in cotton (Gossypium hirsutum L.) fiber elongation

Gene-subgenome/subcategory

Li 1 /wt F

Li 2 /wt F

Li 2 /wt GH

Description

Sugars

Gorai.009G135300_D

−1.2

−1.3

−1.6

carbohydrate transmembrane transporter

Gorai.010G030700_D

−1.5

−1.0

−1.2

sucrose transporter 4

Amino acids

Gorai.006G146500_A

−2.1

−1.4

−3.9

aromatic and neutral transporter 1

Gorai.006G146500_D

−2.0

−1.6

−2.4

aromatic and neutral transporter 1

Gorai.009G453900_A

−1.3

−1.6

−1.7

amino acid permease 7

Gorai.009G321600_A

−1.0

−1.0

−1.2

proline transporter 2

Sulphate

Gorai.002G059100_A

−1.9

−1.1

−2.5

sulfate transporter 3;4

Gorai.002G059100_D

−2.0

−1.2

−2.0

sulfate transporter 3;4

Gorai.009G240100_A

−2.8

−1.2

−1.8

STAS domain/Sulfate transporter family

Phosphate

Gorai.008G179500_A

−1.5

−1.2

−3.0

EXS (ERD1/XPR1/SYG1) family protein

Gorai.010G140300_A

−1.3

−1.3

−1.4

phosphate transporter 1;7

Metabolite transporters at the envelope membrane

Gorai.004G292400_A

−1.2

−1.3

−1.2

Nucleotide-sugar transporter family protein

Gorai.008G241700_A

−1.9

−1.1

−1.5

Nucleotide-sugar transporter family protein

Gorai.003G043000_D

−1.7

−1.7

−1.3

uncoupling protein 5

Metal

Gorai.011G049700_D

−3.4

−1.6

−1.8

zinc transporter 10 precursor

Gorai.003G073800_D

−2.0

−1.2

−1.1

Cation efflux family protein

Peptides and oligopeptides

Gorai.007G049100_D

−1.3

−1.9

−1.4

oligopeptide transporter 7

Gorai.007G049100_A

−1.3

−2.1

−1.4

oligopeptide transporter 7

Gorai.009G271300_A

−2.4

−1.5

−1.9

peptide transporter 1

Unspecified cations

Gorai.006G257200_D

−3.9

−3.4

−3.7

sodium hydrogen exchanger 2

Gorai.002G024800_D

−2.4

−2.7

−1.6

magnesium transporter 9

Potassium

Gorai.010G066400_A

−1.2

−1.2

−1.7

K+ transporter 1

ABC transporters

Gorai.009G304900_A

−1.2

−1.2

−1.3

pleiotropic drug resistance 6

Gorai.002G162300_A

−2.6

−1.9

−3.2

non-intrinsic ABC protein 12

Gorai.001G057400_D

−1.6

−1.6

−2.1

pleiotropic drug resistance 12

Gorai.003G062100_D

−1.5

−1.1

−3.6

ABC-type transporter family protein

Major intrinsic proteins

Gorai.004G001400_D

−3.7

−2.9

−5.1

plasma membrane intrinsic protein 2;4

Gorai.002G002500_A

−2.3

−1.9

−2.5

plasma membrane intrinsic protein 3

Gorai.002G002500_D

−2.0

−1.6

−2.1

plasma membrane intrinsic protein 3

Gorai.002G248400_D

−3.1

−2.6

−2.4

plasma membrane intrinsic protein 2

Gorai.002G248400_A

−1.9

−1.7

−2.1

plasma membrane intrinsic protein 2

Gorai.004G212800_A

−1.3

−1.2

−1.9

plasma membrane intrinsic protein 1;4

Gorai.004G212800_D

−1.4

−1.1

−1.8

plasma membrane intrinsic protein 1;4

Gorai.011G098100_D

−3.1

−1.9

−3.4

plasma membrane intrinsic protein 3

Gorai.011G098100_A

−2.9

−1.6

−1.7

plasma membrane intrinsic protein 3

Gorai.013G265400_D

−2.4

−1.3

−2.1

tonoplast intrinsic protein 1;3

Gorai.013G265400_A

−2.1

−1.4

−1.9

tonoplast intrinsic protein 1;3

Gorai.002G245900_A

−2.7

−2.4

−3.4

gamma tonoplast intrinsic protein

Gorai.003G136600_A

−2.9

−2.7

−3.2

tonoplast intrinsic protein 1;3

Gorai.007G078800_A

−2.3

−1.2

−2.5

NOD26-like intrinsic protein 4;2

Calcium

Gorai.013G196000_D

−1.4

−1.3

−1.4

Sodium/calcium exchanger family protein

Miscelleneous

Gorai.003G000900_D

−3.2

−2.9

−4.0

Auxin efflux carrier family protein

Gorai.003G000900_A

−4.8

−3.9

−3.9

Auxin efflux carrier family protein

Gorai.008G124800_D

−1.1

−1.0

−1.4

cyclic nucleotide gated channel 1

Gorai.007G212500_A

−1.3

−2.3

−2.2

MATE efflux family protein

Gorai.007G212500_D

−1.7

−2.8

−1.8

MATE efflux family protein

Gorai.002G230300_D

−1.4

−1.8

−1.9

MATE efflux family protein

Gorai.001G084300_D

−1.9

−2.2

−2.6

MATE efflux family protein

Gorai.003G066500_A

−4.0

−3.1

−2.7

phosphoglyceride transfer family protein

Gorai.002G017400_A

−2.1

−1.6

−3.0

Secretory carrier membrane protein

Gorai.002G017400_D

−1.2

−1.3

−1.9

Secretory carrier membrane protein

  1. Numbers represent the log base 2 ratio of mutants to wild-type expression; F, field grown plants; and GH, greenhouse grown plants.