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Table 2 Annotations of sRNAs perfectly matching S. europaea mRNA transcriptome

From: High-throughput deep sequencing reveals that microRNAs play important roles in salt tolerance of euhalophyte Salicornia europaea

Class S-0 h (%) R-0 h (%) S-12 h (%) R-12 h (%) S-7 d (%) R-7 d (%)
  Unique redundant Unique redundant Unique redundant Unique redundant Unique redundant Unique redundant
Clean reads 5,692,793 13,043,406 4,919,934 13,516,608 5,245,389 12,696,487 5,250,004 14,684,136 5,624,720 15,014,924 5,139,762 16,048,713
(100) (100) (100) (100) (100) (100) (100) (100) (100) (100) (100) (100)
Total match 169,700 1,485,433 153,610 2,387,707 163,343 1,433,469 162,686 1,931,422 167,370 1,648,118 172,627 2,065,163
(2.981) (11.388) (3.122) (17.665) (3.114) (11.290) (3.100) (13.153) (2.976) (10.976) (3.359) (12.868)
rRNA 20,751 203,443 52,512 724,501 18,856 179,003 57,172 597,189 30,676 489,063 64,971 734,950
(0.365) (1.560) (1.067) (5.360) (0.359) (1.410) (1.089) (4.067) (0.545) (3.257) (1.264) (4.579)
tRNA 15,192 595,658 33,291 566,403 10,033 582,953 28,844 349,209 27,657 1,753,163 59,291 1,088,520
(0.267) (4.567) (0.677) (4.190) (0.191) (4.591) (0.549) (2.378) (0.492) (11.676) (1.154) (6.783)
snRNA 615 1,002 1,247 3,815 569 1,031 1,269 3,998 681 1,133 1,982 6,431
(0.011) (0.008) (0.025) (0.028) (0.011) (0.008) (0.024) (0.027) (0.012) (0.008) (0.039) (0.040)
snoRNA 305 637 446 1,496 261 560 566 1,779 342 830 1,153 4,322
(0.005) (0.005) (0.0095) (0.011) (0.005) (0.004) (0.011) (0.012) (0.006) (0.006) (0.022) (0.027)
repeat 2,072 36,665 5,019 440,957 2,016 16,666 5,891 41,192 2,338 222,854 4,953 80,746
(0.036) (0.281) (0.102) (3.262) (0.038) (0.131) (0.112) (0.281) (0.042) (1.484) (0.096) (0.503)
miRNA 19,973 559,972 20,531 796,548 15,457 482,091 20,198 912,186 23,822 600,269 21,115 1,047,498
(0.351) (4.293) (0.417) (5.893) (0.295) (3.797) (0.385) (6.212) (0.424) (3.998) (0.411) (6.527)
siRNA 189,944 1,403,603 135,787 1,571,363 206,456 1,359,560 152,158 1,348,629 180,530 1,219,863 134,728 1,255,102
(3.337) (10.761) (2.760) (11.625) (3.936) (10.708) (2.898) (9.184) (3.209582) (8.124) (2.621) (7.821)
Un-anno-tated 5,446,013 10,279,091 4,676,120 9,852,482 4,993,757 10,091,289 4,989,797 11,471,146 5,361,012 10,950,603 4,856,522 11,911,890
(95.66505) (78.807) (95.044) (72.892) (95.203) (79.481) (95.044) (78.119) (95.31162) (72.931) (94.489) (74.223)
  1. S-0 h, S-12 h, and S-7 d represent shoot treated with 200 mM NaCl for 0 h, 12 h, and 7 d, respectively. R-0 h, R-12 h, and R-7 d represent root treated with 200 mM NaCl for 0 h, 12 h, and 7 d, respectively.