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Table 2 Annotations of sRNAs perfectly matching S. europaea mRNA transcriptome

From: High-throughput deep sequencing reveals that microRNAs play important roles in salt tolerance of euhalophyte Salicornia europaea

Class

S-0 h (%)

R-0 h (%)

S-12 h (%)

R-12 h (%)

S-7 d (%)

R-7 d (%)

 

Unique

redundant

Unique

redundant

Unique

redundant

Unique

redundant

Unique

redundant

Unique

redundant

Clean reads

5,692,793

13,043,406

4,919,934

13,516,608

5,245,389

12,696,487

5,250,004

14,684,136

5,624,720

15,014,924

5,139,762

16,048,713

(100)

(100)

(100)

(100)

(100)

(100)

(100)

(100)

(100)

(100)

(100)

(100)

Total match

169,700

1,485,433

153,610

2,387,707

163,343

1,433,469

162,686

1,931,422

167,370

1,648,118

172,627

2,065,163

(2.981)

(11.388)

(3.122)

(17.665)

(3.114)

(11.290)

(3.100)

(13.153)

(2.976)

(10.976)

(3.359)

(12.868)

rRNA

20,751

203,443

52,512

724,501

18,856

179,003

57,172

597,189

30,676

489,063

64,971

734,950

(0.365)

(1.560)

(1.067)

(5.360)

(0.359)

(1.410)

(1.089)

(4.067)

(0.545)

(3.257)

(1.264)

(4.579)

tRNA

15,192

595,658

33,291

566,403

10,033

582,953

28,844

349,209

27,657

1,753,163

59,291

1,088,520

(0.267)

(4.567)

(0.677)

(4.190)

(0.191)

(4.591)

(0.549)

(2.378)

(0.492)

(11.676)

(1.154)

(6.783)

snRNA

615

1,002

1,247

3,815

569

1,031

1,269

3,998

681

1,133

1,982

6,431

(0.011)

(0.008)

(0.025)

(0.028)

(0.011)

(0.008)

(0.024)

(0.027)

(0.012)

(0.008)

(0.039)

(0.040)

snoRNA

305

637

446

1,496

261

560

566

1,779

342

830

1,153

4,322

(0.005)

(0.005)

(0.0095)

(0.011)

(0.005)

(0.004)

(0.011)

(0.012)

(0.006)

(0.006)

(0.022)

(0.027)

repeat

2,072

36,665

5,019

440,957

2,016

16,666

5,891

41,192

2,338

222,854

4,953

80,746

(0.036)

(0.281)

(0.102)

(3.262)

(0.038)

(0.131)

(0.112)

(0.281)

(0.042)

(1.484)

(0.096)

(0.503)

miRNA

19,973

559,972

20,531

796,548

15,457

482,091

20,198

912,186

23,822

600,269

21,115

1,047,498

(0.351)

(4.293)

(0.417)

(5.893)

(0.295)

(3.797)

(0.385)

(6.212)

(0.424)

(3.998)

(0.411)

(6.527)

siRNA

189,944

1,403,603

135,787

1,571,363

206,456

1,359,560

152,158

1,348,629

180,530

1,219,863

134,728

1,255,102

(3.337)

(10.761)

(2.760)

(11.625)

(3.936)

(10.708)

(2.898)

(9.184)

(3.209582)

(8.124)

(2.621)

(7.821)

Un-anno-tated

5,446,013

10,279,091

4,676,120

9,852,482

4,993,757

10,091,289

4,989,797

11,471,146

5,361,012

10,950,603

4,856,522

11,911,890

(95.66505)

(78.807)

(95.044)

(72.892)

(95.203)

(79.481)

(95.044)

(78.119)

(95.31162)

(72.931)

(94.489)

(74.223)

  1. S-0 h, S-12 h, and S-7 d represent shoot treated with 200 mM NaCl for 0 h, 12 h, and 7 d, respectively. R-0 h, R-12 h, and R-7 d represent root treated with 200 mM NaCl for 0 h, 12 h, and 7 d, respectively.
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BMC Plant Biology

ISSN: 1471-2229

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