Table 2 Summary of clean reads mapped to the reference genome
Sample name | MT1 | MT2 | MT3 | WT1 | WT2 | WT3 |
|---|---|---|---|---|---|---|
Total reads | 16084513 | 14223118 | 14025066 | 13347784 | 14532229 | 15027468 |
Total mapped | 12712188 (79.03%) | 11321201 (79.6%) | 11196989 (79.84%) | 10593747 (79.37%) | 11554004 (79.51%) | 11856432 (78.9%) |
Multiple mapped | 492073 (3.06%) | 437971 (3.08%) | 477365 (3.4%) | 466493 (3.49%) | 455224 (3.13%) | 532109 (3.54%) |
Uniquely mapped | 12220115 (75.97%) | 10883230 (76.52%) | 10719624 (76.43%) | 10127254 (75.87%) | 11098780 (76.37%) | 11324323 (75.36%) |
Non-splice reads | 8768392 (54.51%) | 7846392 (55.17%) | 7591808 (54.13%) | 7219051 (54.08%) | 7991617 (54.99%) | 8176531 (54.41%) |
Splice reads | 3451723 (21.46%) | 3036838 (21.35%) | 3127816 (22.3%) | 2908203 (21.79%) | 3107163 (21.38%) | 3147792 (20.95%) |