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Table 4 RNA-Seq results from roots confirmed by real-time PCR

From: Transcriptome analysis of nitrogen-starvation-responsive genes in rice

Locus ID RNA-Seq log 2 (N-/N+) RT-PCR log 2 (N-/N+) Putative function
LOC_Os02g02190 3.51 1.55 Transporter, major facilitator family
LOC_Os02g53130 2.57 2.97 Nitrate reductase
LOC_Os06g10780 2.01 3.76 Ethylene-responsive transcription factor ERF014
LOC_Os06g01480 1.66 1.91 NAC domain-containing protein 7
LOC_Os01g50720 1.41 2.23 MYB-related protein Hv33
LOC_Os02g57490 1.41 2.07 LOB domain-containing protein 16
LOC_Os02g41580 1.14 1.97 Phosphoenolpyruvate carboxylase kinase
LOC_Os10g07510 1.08 0.67 LOB domain-containing protein 18
LOC_Os03g32230 1.05 1.76 Zinc finger protein 1
LOC_Os02g40710 1.04 2.12 Ammonium transporter protein
LOC_Os01g64790 −4.97 −2.78 Ethylene-responsive transcription factor ERF110
LOC_Os03g18130 −1.73 −2.02 Asparagine synthetase
LOC_Os08g10080 −1.53 −1.01 NAC domain-containing protein 21/22
LOC_Os11g08210 −1.06 −1.84 NAC domain-containing protein 71
  1. Expression ratios for RNA-Seq data were calculated with the DESeq program. All ratios are presented as Log2N-deficient/N-sufficient. Negative values indicate that expression was reduced under N-starvation.