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Table 3 RNA-Seq results from leaf sheaths confirmed by real-time PCR

From: Transcriptome analysis of nitrogen-starvation-responsive genes in rice

Locus ID RNA-Seq log 2 (N-/N+) RT-PCR log 2 (N-/N+) Putative function
LOC_Os03g32230 4.35 2.25 Zinc finger protein
LOC_Os04g52090 2.32 1.56 Ethylene-responsive transcription factor 4
LOC_Os03g62200 2.26 2.66 Ammonium transporter protein
LOC_Os04g40410 2.25 4.89 High affinity nitrate transporter
LOC_Os02g08440 2.20 2.23 WRKY71
LOC_Os02g43790 1.89 1.27 Ethylene-responsive transcription factor 1A
LOC_Os03g55540 1.72 2.66 ZOS3-18 - C2H2 zinc finger protein
LOC_Os03g60560 1.67 1.08 Zinc finger protein ZAT12
LOC_Os03g60080 1.58 2.68 NAC domain-containing protein 67
LOC_Os01g50820 1.48 1.21 Transporter, major facilitator family
LOC_Os12g02440 1.47 1.89 WRKY transcription factor 46
LOC_Os12g07640 1.47 1.97 Myb-related protein
LOC_Os11g03540 1.46 1.63 Ethylene-responsive transcription factor
LOC_Os05g03900 1.43 1.85 WRKY109
LOC_Os06g41100 1.32 2.32 bZip, transcription factor
LOC_Os07g12340 1.32 1.38 NAC domain-containing protein 67
LOC_Os02g43330 1.30 1.43 Homeobox-associated leucine zipper
LOC_Os02g53130 1.26 2.12 Nitrate reductase
LOC_Os01g53220 1.26 −1.40 Heat stress transcription
LOC_Os02g43170 1.20 3.19 B-box zinc finger family protein
LOC_Os04g50770 1.20 2.21 MYB-related protein Zm1
LOC_Os04g45810 1.13 2.45 Homeobox-leucine zipper protein HOX22
LOC_Os02g49840 1.08 3.32 MADS-box transcription factor 57
LOC_Os01g54600 1.07 2.87 WRKY13
LOC_Os09g28354 1.07 1.07 Heat stress transcription factor B-1
LOC_Os04g43070 1.02 1.72 Ammonium transporter protein
LOC_Os03g42200 −2.00 −1.02 Dof zinc finger domain containing protein
LOC_Os03g08620 −1.60 −2.38 B3 DNA binding domain-containing protein
LOC_Os04g44440 −1.59 0.88 TCP family transcription factor
LOC_Os01g74540 −1.56 1.00 GATA zinc finger domain-containing protein
LOC_Os05g34110 −1.42 0.97 Homeodomain-related
LOC_Os10g42490 −1.26 −2.03 Homeobox and START domain-containing proteins
LOC_Os02g39140 −1.06 1.01 Helix-loop-helix DNA-binding domain containing protein
LOC_Os06g43220 −1.04 −2.12 AP2 domain-containing protein
  1. Expression ratios for RNA-Seq data were calculated with the DESeq program. All ratios are presented as Log2N-deficient/N-sufficient. Negative values indicate that expression was reduced under N-starvation.