Table 3 RNA-Seq results from leaf sheaths confirmed by real-time PCR
From: Transcriptome analysis of nitrogen-starvation-responsive genes in rice
Locus ID | RNA-Seq log 2 (N-/N+) | RT-PCR log 2 (N-/N+) | Putative function |
|---|---|---|---|
LOC_Os03g32230 | 4.35 | 2.25 | Zinc finger protein |
LOC_Os04g52090 | 2.32 | 1.56 | Ethylene-responsive transcription factor 4 |
LOC_Os03g62200 | 2.26 | 2.66 | Ammonium transporter protein |
LOC_Os04g40410 | 2.25 | 4.89 | High affinity nitrate transporter |
LOC_Os02g08440 | 2.20 | 2.23 | WRKY71 |
LOC_Os02g43790 | 1.89 | 1.27 | Ethylene-responsive transcription factor 1A |
LOC_Os03g55540 | 1.72 | 2.66 | ZOS3-18 - C2H2 zinc finger protein |
LOC_Os03g60560 | 1.67 | 1.08 | Zinc finger protein ZAT12 |
LOC_Os03g60080 | 1.58 | 2.68 | NAC domain-containing protein 67 |
LOC_Os01g50820 | 1.48 | 1.21 | Transporter, major facilitator family |
LOC_Os12g02440 | 1.47 | 1.89 | WRKY transcription factor 46 |
LOC_Os12g07640 | 1.47 | 1.97 | Myb-related protein |
LOC_Os11g03540 | 1.46 | 1.63 | Ethylene-responsive transcription factor |
LOC_Os05g03900 | 1.43 | 1.85 | WRKY109 |
LOC_Os06g41100 | 1.32 | 2.32 | bZip, transcription factor |
LOC_Os07g12340 | 1.32 | 1.38 | NAC domain-containing protein 67 |
LOC_Os02g43330 | 1.30 | 1.43 | Homeobox-associated leucine zipper |
LOC_Os02g53130 | 1.26 | 2.12 | Nitrate reductase |
LOC_Os01g53220 | 1.26 | −1.40 | Heat stress transcription |
LOC_Os02g43170 | 1.20 | 3.19 | B-box zinc finger family protein |
LOC_Os04g50770 | 1.20 | 2.21 | MYB-related protein Zm1 |
LOC_Os04g45810 | 1.13 | 2.45 | Homeobox-leucine zipper protein HOX22 |
LOC_Os02g49840 | 1.08 | 3.32 | MADS-box transcription factor 57 |
LOC_Os01g54600 | 1.07 | 2.87 | WRKY13 |
LOC_Os09g28354 | 1.07 | 1.07 | Heat stress transcription factor B-1 |
LOC_Os04g43070 | 1.02 | 1.72 | Ammonium transporter protein |
LOC_Os03g42200 | −2.00 | −1.02 | Dof zinc finger domain containing protein |
LOC_Os03g08620 | −1.60 | −2.38 | B3 DNA binding domain-containing protein |
LOC_Os04g44440 | −1.59 | 0.88 | TCP family transcription factor |
LOC_Os01g74540 | −1.56 | 1.00 | GATA zinc finger domain-containing protein |
LOC_Os05g34110 | −1.42 | 0.97 | Homeodomain-related |
LOC_Os10g42490 | −1.26 | −2.03 | Homeobox and START domain-containing proteins |
LOC_Os02g39140 | −1.06 | 1.01 | Helix-loop-helix DNA-binding domain containing protein |
LOC_Os06g43220 | −1.04 | −2.12 | AP2 domain-containing protein |