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Table 1 Analysis of RNA-Seq data from rice seedlings

From: Transcriptome analysis of nitrogen-starvation-responsive genes in rice

Category

Leaf sheaths

Roots

Total reads

40,756,549

41,703,971

Mapped readsa

34,863,681 (85.5%)

28,612,070 (68.6%)

Paired-end mapped readsb

29,808,452 (85.2%)

25,178,621 (88.1)

Uniquely mapped readsc

33,964,261 (97.4%)

28,057,411 (98.1%)

  1. aReads were aligned to the rice genome by Bowtie and TopHat2.
  2. bPaired-end mapped reads.
  3. cReads were aligned to only one location in the genome.