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Table 1 Analysis of RNA-Seq data from rice seedlings

From: Transcriptome analysis of nitrogen-starvation-responsive genes in rice

Category Leaf sheaths Roots
Total reads 40,756,549 41,703,971
Mapped readsa 34,863,681 (85.5%) 28,612,070 (68.6%)
Paired-end mapped readsb 29,808,452 (85.2%) 25,178,621 (88.1)
Uniquely mapped readsc 33,964,261 (97.4%) 28,057,411 (98.1%)
  1. aReads were aligned to the rice genome by Bowtie and TopHat2.
  2. bPaired-end mapped reads.
  3. cReads were aligned to only one location in the genome.