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Table 5 NBS-LRR-encoding genes in black rot resistance QTL regions identified for B . oleracea in this study, and syntenic orthologs in closely related species

From: Genome-wide SNP identification and QTL mapping for black rot resistance in cabbage

QTL region in B. oleracea

Genes in B. oleracea (Parkin et al. 2014 [ 14 ])

Orthologs in B. rapa

Syntenic genes in A. thaliana

Gene ID b

Position in B. rapa

BRQTL-C1_1

Bo1g056920

Bra034079

A01: 25,091,903 - 25,095,843

 

C01: 14,884,502 - 16,579,946

BRQTL-C1_2

Bo1g057060/070

Bra039560

A01: 11,678,267 - 11,687,802

AT4G14380

C01: 18,227,386 – 37,119,290

 

Bo1g086130

Bra013691

A01: 7,172,559 - 7,175,366

AT4G23440

 

Bo1g087610

Bra038144

Scaffold000140

AT1G57850

 

Bo1g091560

   
 

Bo1g094680/710 a

Bra031456/455 a

A01: 17,128,737 – 17,140,522

AT1G61100/105 a

 

Bo1g103860

   

BRQTL-C3

Bo3g060060/070/080/100/110/130/140 a

Bra001160/161/162 a

A03: 15,040,407 - 15,054,981

 

C03: 19,714,632 - 22,846,644

BRQTL-C6

Bo6g025490

Bra004192

A07: 20,618,348 - 20,627,341

AT1G66840

C06: 7,423,787 - 10,466,894

Bo6g031330/350/360/380

Bra003997

A07: 19,462,054 - 19,467,133

AT1G69550

  1. aTandemly arrayed genes.
  2. bGene ID in BRAD database (http://brassicadb.org/).