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Table 5 NBS-LRR-encoding genes in black rot resistance QTL regions identified for B . oleracea in this study, and syntenic orthologs in closely related species

From: Genome-wide SNP identification and QTL mapping for black rot resistance in cabbage

QTL region in B. oleracea Genes in B. oleracea (Parkin et al. 2014 [ 14 ]) Orthologs in B. rapa Syntenic genes in A. thaliana
Gene ID b Position in B. rapa
BRQTL-C1_1 Bo1g056920 Bra034079 A01: 25,091,903 - 25,095,843  
C01: 14,884,502 - 16,579,946
BRQTL-C1_2 Bo1g057060/070 Bra039560 A01: 11,678,267 - 11,687,802 AT4G14380
C01: 18,227,386 – 37,119,290
  Bo1g086130 Bra013691 A01: 7,172,559 - 7,175,366 AT4G23440
  Bo1g087610 Bra038144 Scaffold000140 AT1G57850
  Bo1g091560    
  Bo1g094680/710 a Bra031456/455 a A01: 17,128,737 – 17,140,522 AT1G61100/105 a
  Bo1g103860    
BRQTL-C3 Bo3g060060/070/080/100/110/130/140 a Bra001160/161/162 a A03: 15,040,407 - 15,054,981  
C03: 19,714,632 - 22,846,644
BRQTL-C6 Bo6g025490 Bra004192 A07: 20,618,348 - 20,627,341 AT1G66840
C06: 7,423,787 - 10,466,894 Bo6g031330/350/360/380 Bra003997 A07: 19,462,054 - 19,467,133 AT1G69550
  1. aTandemly arrayed genes.
  2. bGene ID in BRAD database (http://brassicadb.org/).