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Table 2 Summary of SNPs detected from B. oleracea whole-genome resequencing data and development of dCAPS markers for validation

From: Genome-wide SNP identification and QTL mapping for black rot resistance in cabbage

Ch. Number of SNPs (average bp per SNP) Validation
Ref vs. C1184 Ref vs. C1234 C1184 vs. C1234 Amplified/Designed Polymorphic (h) a % b
C01 122,191 (358.2) 114,778 (381.3) 66,197 (661.1) 31 / 35 20 (4) 64.5%
C02 149,730 (353.2) 161,246 (328.0) 74,741 (707.6) 14 / 17 10 (1) 71.4%
C03 196,150 (331.3) 205,306 (316.5) 120,115 (541.0) 13 / 22 11 (1) 84.6%
C04 136,815 (392.6) 132,144 (406.5) 86,999 (617.5) 14 / 20 8 (4) 57.1%
C05 130,557 (359.2) 132,887 (353.0) 57,417 (818.9) 15 / 18 14 (2) 93.3%
C06 87,712 (454.1) 102,422 (388.8) 63,017 (631.9) 28 / 34 16 (4) 57.1%
C07 119,275 (405.5) 128,978 (375.0) 69,905 (691.9) 8 / 15 5 (1) 62.5%
C08 108,586 (384.6) 113,956 (366.4) 68,361 (610.9) 21 / 26 18 (3) 85.7%
C09 147,866 (369.8) 149,581 (365.6) 67,768 (806.9) 23 / 35 15 (6) 65.2%
Total 1,198,882 (372.8) 1,241,298 (360.0) 674,521 (662.5) 167 / 222 117 (26) 70.1%
  1. ah is the number of markers that showed heterozygous results.
  2. bPercentage of the total amplified dCAPS markers that were polymorphic.