Table 2 Summary of SNPs detected from B. oleracea whole-genome resequencing data and development of dCAPS markers for validation
From: Genome-wide SNP identification and QTL mapping for black rot resistance in cabbage
Ch. | Number of SNPs (average bp per SNP) | Validation | |||||||
|---|---|---|---|---|---|---|---|---|---|
Ref vs. C1184 | Ref vs. C1234 | C1184 vs. C1234 | Amplified/Designed | Polymorphic (h) a | % b | ||||
C01 | 122,191 | (358.2) | 114,778 | (381.3) | 66,197 | (661.1) | 31 / 35 | 20 (4) | 64.5% |
C02 | 149,730 | (353.2) | 161,246 | (328.0) | 74,741 | (707.6) | 14 / 17 | 10 (1) | 71.4% |
C03 | 196,150 | (331.3) | 205,306 | (316.5) | 120,115 | (541.0) | 13 / 22 | 11 (1) | 84.6% |
C04 | 136,815 | (392.6) | 132,144 | (406.5) | 86,999 | (617.5) | 14 / 20 | 8 (4) | 57.1% |
C05 | 130,557 | (359.2) | 132,887 | (353.0) | 57,417 | (818.9) | 15 / 18 | 14 (2) | 93.3% |
C06 | 87,712 | (454.1) | 102,422 | (388.8) | 63,017 | (631.9) | 28 / 34 | 16 (4) | 57.1% |
C07 | 119,275 | (405.5) | 128,978 | (375.0) | 69,905 | (691.9) | 8 / 15 | 5 (1) | 62.5% |
C08 | 108,586 | (384.6) | 113,956 | (366.4) | 68,361 | (610.9) | 21 / 26 | 18 (3) | 85.7% |
C09 | 147,866 | (369.8) | 149,581 | (365.6) | 67,768 | (806.9) | 23 / 35 | 15 (6) | 65.2% |
Total | 1,198,882 | (372.8) | 1,241,298 | (360.0) | 674,521 | (662.5) | 167 / 222 | 117 (26) | 70.1% |