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Table 3 GO categories significantly associated with particular E -type expression profiles

From: Transcriptomic changes due to water deficit define a general soybean response and accession-specific pathways for drought avoidance

Type GO accession Description % in group % BG b FDR
Down-early (1400a) GO:0015979 photosynthesis 3.29 0.63 1.8E-14
  GO:0055114 oxidation reduction 13.86 8.71 2.3E-07
  GO:0006629 lipid metabolic process 6.57 3.45 6.5E-06
  GO:0018130 heterocycle biosynthetic process 1.57 0.47 5.0E-04
  GO:0034641 cellular nitrogen compound metabolic process 4.36 2.30 5.9E-04
  GO:0045454 cell redox homeostasis 2.14 0.83 8.5E-04
Down-linear (1054) GO:0015979 photosynthesis 3.51 0.63 3.0E-12
  GO:0006520 cellular amino acid metabolic process 4.08 1.60 2.5E-05
  GO:0043039 tRNA aminoacylation 1.52 0.35 3.0E-04
Down-late (1213) GO:0006412 translation 20.86 3.21 4.5E-111
  GO:0034660 ncRNA metabolic process 3.30 0.85 9.0E-10
  GO:0044106 cellular amine metabolic process 4.04 1.66 3.9E-06
  GO:0015684 ferrous iron transport 0.74 0.12 2.2E-03
Up-early (952) GO:0006886 intracellular protein transport 3.15 0.96 3.2E-05
Up-linear (1494) GO:0044257 cellular protein catabolic process 2.61 0.61 7.3E-10
  GO:0016236 macroautophagy 0.60 0.05 4.7E-05
  GO:0015991 ATP hydrolysis coupled proton transport 1.07 0.21 5.4E-05
  GO:0007264 small GTPase mediated signal transduction 2.21 1.02 4.2E-03
Up-late (827) No significant enrichment     
Peak (448) No significant enrichment     
Trough (432) GO:0006333 chromatin assembly or disassembly 2.23 0.37 1.6E-03
  1. aTotal number of genes within a category that have a GO annotation.
  2. bBackground model (BG) comprises all 29,641 soybean genes with a GO annotation.