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Table 1 Statistics of categorization and abundance of DGE tags

From: Digital gene expression analysis of gene expression differences within Brassica diploids and allopolyploids

Summary   B. rapa B. nigra B. oleracea B. napus B. juncea B. carinata
Raw Tag Total 6178564 5881618 6059222 5964594 6076830 5795234
Raw Tag Distinct Tag 293575 214427 243895 269285 400134 278768
Clean Tag Total number 6018254 5772449 5930726 5823113 5858527 5657697
Clean Tag Distinct Tag number 133499 106552 116771 128967 181965 142281
Tag Mapping to Gene Total number 1964909 1990442 1747843 2253347 1857572 1915305
Tag Mapping to Gene Distinct Tag number 44267 30413 36220 45358 56289 40425
Unambiguous Tag Mapping to Gene Total number 1679848 1635594 1475050 1924944 1531974 1594991
Unambiguous Tag Mapping to Gene Total% of clean tag 27.91% 28.33% 24.87% 33.06% 26.15% 28.19%
Unambiguous Tag Mapping to Gene Distinct Tag number 39414 26114 31933 40561 49892 35285
Unambiguous Tag Mapping to Gene Distinct Tag% of clean tag 29.52% 24.51% 27.35% 31.45% 27.42% 24.80%
Tag-mapped Genes number 19023 16687 18547 19955 21995 19436
Tag-mapped Genes % of ref genes 46.20% 40.53% 45.05% 48.47% 53.42% 47.20%
Unambiguous Tag-mapped Genes number 16574 13867 15970 17448 19424 16645
Unambiguous Tag-mapped Genes % of ref genes 40.25% 33.68% 38.79% 42.38% 47.18% 40.43%
Mapping to Genome Total number 2437918 1147106 2105332 2164464 2047451 1462061
Mapping to Genome Total% of clean tag 40.51% 19.87% 35.50% 37.17% 34.95% 25.84%
Mapping to Genome Distinct Tag number 44076 15159 30703 40689 50304 29547
Mapping to Genome Distinct Tag% of clean tag 33.02% 14.23% 26.29% 31.55% 27.64% 20.77%
Unknown Tag Total number 1615427 2634901 2077551 1405302 1953504 2280331
Unknown Tag Total% of clean tag 26.84% 45.65% 35.03% 24.13% 33.34% 40.30%
Unknown Tag Distinct Tag number 45156 60980 49848 42920 75372 72309
Unknown Tag Distinct Tag% of clean tag 33.82% 57.23% 42.69% 33.28% 41.42% 50.82%
  1. Clean tags are tags after filtering low-quality tags from raw data. Distinct tags are different tags and unambiguous tags are the remaining clean tags after removing tags mapped to more than one locus of reference genome.