Skip to main content
Figure 4 | BMC Plant Biology

Figure 4

From: Histone chaperones in Arabidopsis and rice: genome-wide identification, phylogeny, architecture and transcriptional regulation

Figure 4

Phylogenetic analysis of ASF1, HIRA, and NASP families of histone chaperones from diverse eukaryotic taxa. Phylogenetic trees constructed to show evolutionary distances among the members of ASF1 (A), HIRA (B), and NASP (C) families from Arabidopsis thaliana (named by prefixing ‘At’), Oryza sativa (named by prefixing ‘Os’), Chlamydomonas reinhardtii (represented by the prefix ‘Cre’ with the locus id), Physcomitrella patens (represented by the prefix ‘Phpat’ with the locus id), Selaginella moellendorffii (named by prefixing ‘Sm’), Picea abies (named by prefixing ‘Pa’), Saccharomyces cerevisiae (named by prefixing ‘Sc’), and Homo sapiens (named by prefixing ‘Hs’). Multiple sequence alignment was carried out using ClustalX2 and the tree was constructed using MEGA 6.06 using Maximum Likelihood method and viewed using iTOL. Reliability of the branches was inferred from bootstrap analyses of 1000 replicates. Bootstrap values above 50% have been shown as numbers. Roman numerals show arbitrary numbers given to the phylogenetic groups. Sequence ids of the proteins used for generation of the trees have been given in Table 1 (for Arabidopsis), Table 2 (for rice), and Additional file 2: Table S2 (for S. cerevisiae, and H. sapiens) and Additional file 3: Table S3 (for rest of the studied species).

Back to article page