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Table 3 Sliced targets were identified using CleaveLand pipline

From: Characterization of miRNAs associated with Botrytis cinerea infection of tomato leaves

miRNA name

Target

Cleave site

category

Target annotation

miRn1

Solyc03g121180.2.1

816

3

GDSL esterase/lipase At5g22810

miRn1

Solyc03g123500.2.1

370

4

Pathogenesis-related transcriptional factor and ERF, DNA-binding

miRn1

Solyc04g017620.2.1

363

3

Phosphatidylinositol-4-phosphate 5-kinase 9

miRn1

Solyc06g063070.2.1

447

3

Pathogenesis-related transcriptional factor and ERF, DNA-binding

miRn1

Solyc09g008480.2.1

2181

2

Phosphatidylinositol-4-phosphate 5-kinase 9

miRn3

Solyc01g067070.2.1

959

3

Mitochondrial deoxynucleotide carrier

miRn3

Solyc01g111600.2.1

494

3

Metal ion binding protein

miRn3

Solyc03g115820.2.1

1115

2

Ribulose-5-phosphate-3-epimerase

miRn3

Solyc03g118020.2.1

2483

2

RNA-induced silencing complex

miRn3

Solyc06g008110.2.1

1236

2

WD repeat-containing protein

miRn3

Solyc06g074720.2.1

324

4

MKI67 FHA domain-interacting nucleolar phosphoprotein-like

miRn3

Solyc07g017500.2.1

1272

0

Lateral signaling target protein 2 homolog

miRn3

Solyc07g047670.2.1

1347

2

Pescadillo homolog 1

miRn3

Solyc07g066650.2.1

887

3

DCN1-like protein 2, Defective in cullin neddylation

miRn3

Solyc10g076250.1.1

948

2

Aminotransferase like protein

miRn3

Solyc11g006680.1.1

2199

2

Pentatricopeptide repeat-containing protein

miRn4-2

Solyc04g054480.2.1

4328

4

C2 domain-containing protein-like

miRn4-2

Solyc10g005730.2.1

849

4

WD-40 repeat family protein

miRn5

Solyc11g069570.1.1

306

3

Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG

miRn5

Solyc12g056800.1.1

575

2

Oxidoreductase family protein

miRn6

Solyc01g009230.2.1

4003

2

Xanthine oxidase

miRn6

Solyc02g072130.2.1

1191

3

Protein transport protein SEC61 alpha subunit

miRn6

Solyc05g015680.1.1

144

4

Serine/threonine-protein phosphatase 7 long form

miRn6

Solyc06g050650.1.1

489

3

Serine/threonine-protein phosphatase 7 long form

miRn6

Solyc06g084000.2.1

417

2

Heterogeneous nuclear ribonucleoprotein K

miRn6

Solyc07g042120.1.1

783

0

Serine/threonine-protein phosphatase 7 long form

miR159

Solyc01g009070.2.1

967

0

MYB transcription factor

miR159

Solyc05g053100.2.1

1088

4

Dihydrolipoyl dehydrogenase

miR159

Solyc06g048730.2.1

1010

2

Uroporphyrinogen decarboxylase

miR159

Solyc06g073640.2.1

997

0

MYB transcription factor

miR159

Solyc10g083280.1.1

357

2

evidence_code:10F0H1E1IEG 30S ribosomal protein S.1

miR159

Solyc12g014120.1.1

472

2

evidence_code:10F0H0E1IEG Unknown Protein

miR160

Solyc01g107510.2.1

1843

2

DNA polymerase IV

miR160

Solyc06g075150.2.1

1280

0

Auxin response factor 16

miR160

Solyc09g007810.2.1

1364

4

Auxin response factor 3

miR160

Solyc11g010790.1.1

855

3

Glucosyltransferase

miR160

Solyc11g010800.1.1

447

3

Anthocyanidin 3-O-glucosyltransferase

miR160

Solyc11g010810.1.1

855

4

Glucosyltransferase

miR160

Solyc11g013470.1.1

554

0

Auxin response factor 17 (Fragment)

miR160

Solyc11g069500.1.1

1313

0

Auxin response factor 16

miR169

Solyc01g090420.2.1

1893

2

Armadillo/beta-catenin repeat family protein

miR1919

Solyc03g111340.2.1

1215

4

Ubiquitin-like modifier-activating enzyme 5

miR1919

Solyc12g043020.1.1

1209

3

evidence_code:10F0H1E1IEG Dihydroxy-acid dehydratase

miR319

Solyc06g068010.2.1

702

2

Biotin carboxyl carrier protein of acetyl-CoA carboxylase

miR319

Solyc08g048370.2.1

763

3

Transcription factor CYCLOIDEA (Fragment)

miR319

Solyc08g048390.1.1

1025

2

evidence_code:10F0H1E1IEG Transcription factor CYCLOIDEA (Fragment)

miR394

Solyc01g109400.2.1

488

3

Flavoprotein wrbA

miR394

Solyc01g109660.2.1

298

2

Glycine-rich RNA-binding protein

miR394

Solyc05g015520.2.1

1162

2

F-box family protein

miR394

Solyc06g051750.2.1

1208

2

Cytochrome P450″

miR394

Solyc06g082220.2.1

707

3

Tat specific factor.1

miR394

Solyc12g044860.1.1

1328

2

evidence_code:10F0H1E1IEG ATP dependent RNA helicase

miR5300

Solyc08g068870.2.1

679

2

Aspartic proteinase nepenthesin.1

miR5300

Solyc11g012970.1.1

265

2

Aminoacylase.1