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Table 3 Sliced targets were identified using CleaveLand pipline

From: Characterization of miRNAs associated with Botrytis cinerea infection of tomato leaves

miRNA name Target Cleave site category Target annotation
miRn1 Solyc03g121180.2.1 816 3 GDSL esterase/lipase At5g22810
miRn1 Solyc03g123500.2.1 370 4 Pathogenesis-related transcriptional factor and ERF, DNA-binding
miRn1 Solyc04g017620.2.1 363 3 Phosphatidylinositol-4-phosphate 5-kinase 9
miRn1 Solyc06g063070.2.1 447 3 Pathogenesis-related transcriptional factor and ERF, DNA-binding
miRn1 Solyc09g008480.2.1 2181 2 Phosphatidylinositol-4-phosphate 5-kinase 9
miRn3 Solyc01g067070.2.1 959 3 Mitochondrial deoxynucleotide carrier
miRn3 Solyc01g111600.2.1 494 3 Metal ion binding protein
miRn3 Solyc03g115820.2.1 1115 2 Ribulose-5-phosphate-3-epimerase
miRn3 Solyc03g118020.2.1 2483 2 RNA-induced silencing complex
miRn3 Solyc06g008110.2.1 1236 2 WD repeat-containing protein
miRn3 Solyc06g074720.2.1 324 4 MKI67 FHA domain-interacting nucleolar phosphoprotein-like
miRn3 Solyc07g017500.2.1 1272 0 Lateral signaling target protein 2 homolog
miRn3 Solyc07g047670.2.1 1347 2 Pescadillo homolog 1
miRn3 Solyc07g066650.2.1 887 3 DCN1-like protein 2, Defective in cullin neddylation
miRn3 Solyc10g076250.1.1 948 2 Aminotransferase like protein
miRn3 Solyc11g006680.1.1 2199 2 Pentatricopeptide repeat-containing protein
miRn4-2 Solyc04g054480.2.1 4328 4 C2 domain-containing protein-like
miRn4-2 Solyc10g005730.2.1 849 4 WD-40 repeat family protein
miRn5 Solyc11g069570.1.1 306 3 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG
miRn5 Solyc12g056800.1.1 575 2 Oxidoreductase family protein
miRn6 Solyc01g009230.2.1 4003 2 Xanthine oxidase
miRn6 Solyc02g072130.2.1 1191 3 Protein transport protein SEC61 alpha subunit
miRn6 Solyc05g015680.1.1 144 4 Serine/threonine-protein phosphatase 7 long form
miRn6 Solyc06g050650.1.1 489 3 Serine/threonine-protein phosphatase 7 long form
miRn6 Solyc06g084000.2.1 417 2 Heterogeneous nuclear ribonucleoprotein K
miRn6 Solyc07g042120.1.1 783 0 Serine/threonine-protein phosphatase 7 long form
miR159 Solyc01g009070.2.1 967 0 MYB transcription factor
miR159 Solyc05g053100.2.1 1088 4 Dihydrolipoyl dehydrogenase
miR159 Solyc06g048730.2.1 1010 2 Uroporphyrinogen decarboxylase
miR159 Solyc06g073640.2.1 997 0 MYB transcription factor
miR159 Solyc10g083280.1.1 357 2 evidence_code:10F0H1E1IEG 30S ribosomal protein S.1
miR159 Solyc12g014120.1.1 472 2 evidence_code:10F0H0E1IEG Unknown Protein
miR160 Solyc01g107510.2.1 1843 2 DNA polymerase IV
miR160 Solyc06g075150.2.1 1280 0 Auxin response factor 16
miR160 Solyc09g007810.2.1 1364 4 Auxin response factor 3
miR160 Solyc11g010790.1.1 855 3 Glucosyltransferase
miR160 Solyc11g010800.1.1 447 3 Anthocyanidin 3-O-glucosyltransferase
miR160 Solyc11g010810.1.1 855 4 Glucosyltransferase
miR160 Solyc11g013470.1.1 554 0 Auxin response factor 17 (Fragment)
miR160 Solyc11g069500.1.1 1313 0 Auxin response factor 16
miR169 Solyc01g090420.2.1 1893 2 Armadillo/beta-catenin repeat family protein
miR1919 Solyc03g111340.2.1 1215 4 Ubiquitin-like modifier-activating enzyme 5
miR1919 Solyc12g043020.1.1 1209 3 evidence_code:10F0H1E1IEG Dihydroxy-acid dehydratase
miR319 Solyc06g068010.2.1 702 2 Biotin carboxyl carrier protein of acetyl-CoA carboxylase
miR319 Solyc08g048370.2.1 763 3 Transcription factor CYCLOIDEA (Fragment)
miR319 Solyc08g048390.1.1 1025 2 evidence_code:10F0H1E1IEG Transcription factor CYCLOIDEA (Fragment)
miR394 Solyc01g109400.2.1 488 3 Flavoprotein wrbA
miR394 Solyc01g109660.2.1 298 2 Glycine-rich RNA-binding protein
miR394 Solyc05g015520.2.1 1162 2 F-box family protein
miR394 Solyc06g051750.2.1 1208 2 Cytochrome P450″
miR394 Solyc06g082220.2.1 707 3 Tat specific factor.1
miR394 Solyc12g044860.1.1 1328 2 evidence_code:10F0H1E1IEG ATP dependent RNA helicase
miR5300 Solyc08g068870.2.1 679 2 Aspartic proteinase nepenthesin.1
miR5300 Solyc11g012970.1.1 265 2 Aminoacylase.1