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Table 2 Known miRNA families and their transcript abundance identified from TC7d and TD7d libraries in tomato

From: Characterization of miRNAs associated with Botrytis cinerea infection of tomato leaves

conserved miRNA family No. of members miRNA reads count (RPM) Log2 (TD7d/TC7dC) P-value Significance (Up/Down)
TC7d TD7d
Conserved miRNA family
miR156 25 39076 85295 1.13 0.0000 ** (Up)
miR157 2 481 865 0.85 0.0000  
miR159 2 128 331 1.37 0.00 ** (Up)
miR160 2 13 19 0.59 0.0000  
miR162 3 491 527 0.10 0.0000  
miR164 3 100 184 0.88 0.0000  
miR165 1 7 6 −0.07 0.7470  
miR166 19 28611 21493 −0.41 0.0000  
miR167 7 7843 8977 0.19 0.0000  
miR168 7 11938 17420 0.55 0.0000  
miR169 4 4 7 0.71 0.0016  
miR170 2 2 2 0.12 0.7557  
miR171 8 103 83 −0.32 0.0000  
miR172 10 890 772 −0.20 0.0000  
miR319 3 2 8 2.33 0.0000 ** (Up)
miR390 4 476 607 0.35 0.0000  
miR393 1 28 30 0.14 0.1483  
miR394 1 1 6 2.23 0.0000 ** (Up)
miR395 1 2 3 0.70 0.0585  
miR396 6 147 172 0.23 0.0000  
miR399 5 12 14 0.15 0.2994  
miR477 1 2 2 0.27 0.4504  
miR482 6 115 235 1.03 0.0000 ** (Up)
Non-conserved miRNA family
miR827 2 2 2 0.01 0.9654  
miR894 1 1 1 0.35 0.4469  
miR1446 1 0 2 7.85 0.0000 ** (Up)
miR1511 1 1 1 0.91 0.1035  
miR1919 2 86 153 0.83 0.0000  
miR2111 1 1 0 −6.57 0.0001 ** (Down)
miR4376 2 180 187 0.06 0.1292  
miR5300 1 515 1401 1.44 0.0000 ** (Up)
miR5301 1 54 103 0.93 0.0000  
miR5304 1 7 13 0.81 0.0000  
miR6022 1 975 1317 0.43 0.0000  
miR6023 1 89 101 0.17 0.0015  
miR6024 1 56 103 0.89 0.0000  
miR6026 1 2 2 0.52 0.1671  
miR6027 1 3750 3211 −0.22 0.0000  
miR6300 1 1 3 1.60 0.0002 ** (Up)
miR7122 1 1 1 1.07 0.0488  
  1. **Significant difference; Up, Up-regulation; Down, Down-regulation.