Table 2 Known miRNA families and their transcript abundance identified from TC7d and TD7d libraries in tomato

miR156

25

39076

85295

1.13

0.0000

** (Up)

miR157

2

481

865

0.85

0.0000

miR159

2

128

331

1.37

0.00

** (Up)

miR160

2

13

19

0.59

0.0000

miR162

3

491

527

0.10

0.0000

miR164

3

100

184

0.88

0.0000

miR165

1

7

6

−0.07

0.7470

miR166

19

28611

21493

−0.41

0.0000

miR167

7

7843

8977

0.19

0.0000

miR168

7

11938

17420

0.55

0.0000

miR169

4

4

7

0.71

0.0016

miR170

2

2

2

0.12

0.7557

miR171

8

103

83

−0.32

0.0000

miR172

10

890

772

−0.20

0.0000

miR319

3

2

8

2.33

0.0000

** (Up)

miR390

4

476

607

0.35

0.0000

miR393

1

28

30

0.14

0.1483

miR394

1

1

6

2.23

0.0000

** (Up)

miR395

1

2

3

0.70

0.0585

miR396

6

147

172

0.23

0.0000

miR399

5

12

14

0.15

0.2994

miR477

1

2

2

0.27

0.4504

miR482

6

115

235

1.03

0.0000

** (Up)

miR827

2

2

2

0.01

0.9654

miR894

1

1

1

0.35

0.4469

miR1446

1

0

2

7.85

0.0000

** (Up)

miR1511

1

1

1

0.91

0.1035

miR1919

2

86

153

0.83

0.0000

miR2111

1

1

0

−6.57

0.0001

** (Down)

miR4376

2

180

187

0.06

0.1292

miR5300

1

515

1401

1.44

0.0000

** (Up)

miR5301

1

54

103

0.93

0.0000

miR5304

1

7

13

0.81

0.0000

miR6022

1

975

1317

0.43

0.0000

miR6023

1

89

101

0.17

0.0015

miR6024

1

56

103

0.89

0.0000

miR6026

1

2

2

0.52

0.1671

miR6027

1

3750

3211

−0.22

0.0000

miR6300

1

1

3

1.60

0.0002

** (Up)

miR7122

1

1

1

1.07

0.0488