Table 1 Overrepresented motifs in Salicylic acid repressed (SR) group in the -600 bp to -800 bp region upstream TSS
Consensus motif | OE | LIFT | PLACE ID |
|---|---|---|---|
GCCATG | 33 | 6.404850381 | NDEGMSAUR |
CGATCC | 27.5 | 5.337375318 | AGMOTIFNTMYB2 |
CACTCG | 27.5 | 5.337375318 | ABREDISTBBNNAPA |
ACCCGT | 22 | 4.269900254 | QARBNEXTA |
CACGCT | 22 | 4.269900254 | ABREMOTIFIIIOSRAB16B |
GTCGAC | 18 | 6.404850381 | DRECRTCOREAT |
CGATGG | 15 | 5.337375318 | ABRECE1HVA22 |
TGTACG | 13.2 | 6.404850381 | ABRE3HVA22 |
AAGGTA | 12.1 | 11.7422257 | GARE2OSREP1 |
ACGGGT | 12 | 4.269900254 | QARBNEXTA |
CGTACC | 12 | 4.269900254 | ABRE3HVA22 |
CGTGAC | 12 | 4.269900254 | LS5ATPR1 |
GCACTG | 12 | 4.269900254 | D4GMAUX28 |
ACTGAC | 11 | 5.337375318 | WBOXNTCHN48 |
CGTAGC | 10.5 | 7.472325445 | LS5ATPR1 |
GTCACG | 10.5 | 7.472325445 | LS5ATPR1 |
TAGCCG | 10.5 | 3.736162722 | AGCBOXNPGLB |
TATACG | 9.9 | 9.607275572 | RSRBNEXTA |
TGGACC | 9 | 6.404850381 | UPRE1AT |
TAGGTC | 8.4 | 7.472325445 | MYB26PS |
AGGCCC | 8 | 8.539800509 | SORLIP2AT |
CTAGAC | 7.7 | 3.736162722 | SURECOREATSULTR11 |
CACACG | 7.5 | 5.337375318 | QARBNEXTA |
CGGCTT | 7.5 | 5.337375318 | PR2GCNT |
GCAGCA | 7.5 | 5.337375318 | D4GMAUX28 |
TGTGCC | 7.5 | 5.337375318 | RNFG2OS |
ATGGCC | 7.5 | 5.337375318 | CAATBOX2 |
GTTCAG | 7.2 | 6.404850381 | WBOXNTCHN48 |
GCATAG | 7.2 | 6.404850381 | LS7ATPR1 |
TATCGG | 7.2 | 6.404850381 | GAREHVAMY1 |
AATGCG | 6.6 | 3.202425191 | AS1LIKECSHPRA |
GTATGC | 6.6 | 3.202425191 | SORLIP4AT |
CCCATC | 6 | 4.269900254 | AUXREPSIAA4 |
CTCTCG | 6 | 4.269900254 | DRE1COREZMRAB17 |
AACCGC | 6 | 4.269900254 | AGCBOXNPGLB |
ACAGGC | 6 | 4.269900254 | ANAERO5CONSENSUS |
AGACGC | 6 | 4.269900254 | AGCBOXNPGLB |
AGGGCA | 6 | 4.269900254 | ANAERO5CONSENSUS |
CGTTGG | 6 | 4.269900254 | NDEGMSAUR |
GGACCA | 6 | 4.269900254 | ABREMOTIFIOSRAB16B |
GGTACT | 6 | 5.337375318 | ABREMOTIFIOSRAB16B |
GTGTCC | 6 | 4.269900254 | ABRETAEM |
GTTAGG | 6 | 4.269900254 | MYB26PS |
TCTCGA | 6 | 5.337375318 | TGA1ANTPR1A |