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Table 4 Candidate genes for each significantly SNP associated with TL, SD, and KR and its respective encoding product

From: Genome-wide association study reveals a set of genes associated with resistance to the Mediterranean corn borer (Sesamia nonagrioides L.) in a maize diversity panel

Chr a Trait SNP physical position (bp) Gene ID Encoding
2 TL 168,004,182 GRMZM2G504910 Tetratricopeptide repeat (TPR)
3 TL 7,081,859 GRMZM2G104081b hex1 (hexokinase1)
4 TL 190,444,179 GRMZM2G013128b Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein
4 TL 190,679,094 GRMZM2G033820 Phospholipase A2
7 TL 154,739,818 GRMZM2G077008bc Histidine kinase, hybrid-type, ethylene sensor
154,741,622
7 TL 155,702,328 GRMZM2G861541 Expressed protein
10 TL 133,337,924 GRMZM2G057084 Calcium/calmodulin-dependent protein kinase
133,337,925
133,337,950
1 SD 208,315,891 GRMZM2G101422 Expressed protein
1 SD 293,163,491 GRMZM2G060702b Actin depolymerizing factor 4
2 SD 59,729,532 GRMZM2G389097 Leucine-rich receptor-like protein kinase family
5 SD 176,870,721 GRMZM2G325683c Expressed protein
3 KR 187,742,562 GRMZM2G438551 cystatin1
3 KR 204,458,505 GRMZM2G111666 basic Helix-Loop-Helix (bHLH) transcription f.
3 KR 204,586,960 GRMZM2G091494c Starch branching enzyme interacting protein-1
3 KR 222,733,400 GRMZM2G055578c Glycine-rich protein
    GRMZM2G055629 Plant thionin family protein precursor/Defensin
4 KR 227,101,950 GRMZM2G116314 Ubiquitin thiolesterase
227,101,985
5 KR 93,580,059 GRMZM2G037308c Phytosulfokine receptor
6 KR 88,149,024 GRMZM5G876960 Polyamine oxidase (propa-1,3-diamine-forming)
   88,149,036   
7 KR 15,072,370 GRMZM2G316256 Catalase//L-ascorbate peroxidase
7 KR 19,347,596 GRMZM2G042627 Kinase associated protein phosphatase
  1. a Chr, chromosome; TL, tunnel length; SD, stem damage; and KR, kernel resistance.
  2. b Gene containing the significant SNP within an exonic region.
  3. c Gene containing the significant SNP within an intronic region.