Genome-wide identification and comparative analysis of the heat shock transcription factor family in Chinese white pear (Pyrus bretschneideri) and five other Rosaceae species

Table 1 Genome information and Hsf genes number identified in Rosaceae species

Common name	Scientific name	Chromosome number	Release version	Genome gene number	Identified	Gene name prefix
Common name	Scientific name	Chromosome number	Release version	Genome gene number	*Hsf* genes	Gene name prefix
Chinese white pear	Pyrus bretschneideri	34	NJAU, v1.0	42341	29 (38)	Pbr
Apple	Malus domestica	34	GDR, v1.0	63541	25 (49)	MDP
Peach	Prunus persica	16	JGI, v1.0	27864	17 (21)	ppa
Strawberry	Fragaria vesca	14	GDR, v1.0	32831	16(16)	gene
Chinese plum	Prunus mume	16	BFU, v1.0	31390	17 (20)	Pm
European pear	Pyrus communis	34	GDR, v1.0	43419	33 (41)	PCP

In this study we totally investigated six Rosaceae species genomes. NJAU, Nanjing Agricultural Univerisity (http://peargenome.njau.edu.cn/); GDR, Genome Database for Rosaceae (http://www.rosaceae.org/); JGI, Joint Genome Institude (http://www.jgi.doe.gov/); BFU, Beijing Forestry University (http://prunusmumegenome.bjfu.edu.cn/index.jsp). The numbers in parenthesis show gene count before filtering the unanchored and incomplete genes.

ISSN: 1471-2229