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Table 4 Distribution of reactions of the inferred genome-wide metabolic network in different functional categories

From: ocsESTdb: a database of oil crop seed EST sequences for comparative analysis and investigation of a global metabolic network and oil accumulation metabolism

 

G. max

B. napus (LO)

B. napus (HO)

A. hypogaea

S. indicum

Functional category

Reactions

Metabolites

Reactions

Metabolites

Reactions

Metabolites

Reactions

Metabolites

Reactions

Metabolites

Carbohydrate Metabolism

319(13.7%)

269(13.8%)

183(14.4%)

168(10.7%)

221(14.3%)

261(14.5%)

323(13.8%)

275(14.3%)

316(15.65%)

303(13.97%)

Energy metabolism

52(2.2%)

69(3.5%)

28(2.2%)

72(4.6%)

33(2.1%)

79(4.4%)

51(2.2%)

66(3.4%)

29(1.44%)

52(2.40%)

Lipid metabolism

467(20.1%)

412(21.1%)

246(19.3%)

340(21.7%)

280(18.1%)

361(20%)

478(20.5%)

408(21.2%)

350(17.34%)

391(18.03%)

Nucleotide metabolism

170(7.3%)

125(6.4%)

62(4.9%)

88(5.6%)

122(7.9%)

115(6.4%)

124(5.3%)

107(5.6%)

150(7.43%)

120(5.53%)

Amino Acid metabolism

380(16.3%)

367(18.8%)

230(18.1%)

336(21.5%)

291(18.8%)

384(21.3%)

437(18.7%)

344(17.9%)

373(18.47%)

432(19.92%)

Metabolism of other amino acids

91(3.9%)

120(6.1%)

42(3.3%)

106(6.8%)

54(3.5%)

126(7%)

92(3.9%)

45(2.3%)

72(3.57%)

122(5.62%)

Glycan biosynthesis and metabolism

71(3%)

95(4.9%)

37(2.9%)

89(5.7%)

43(2.8%)

94(5.2%)

57(2.4%)

122(6.3%)

85(4.21%)

143(6.59%)

Biosynthesis of polyketides and nonribosomal peptides

8(0.3%)

17(0.9%)

8(0.6%)

19(1.2%)

8(0.5%)

19(1.1%)

8(0.3%)

86(4.5%)

10(0.50%)

20(0.92%)

Metabolism of cofactors and vitamins

131(5.6%)

180(9.2%)

64(5%)

133(8.5%)

95(6.1%)

176(9.8%)

121(5.2%)

17(0.9%)

141(6.98%)

194(8.94%)

Biosynthesis of secondary metabolites

324(13.9%)

332(17%)

222(17.4%)

303(19.3%)

235(15.2%)

327(18.1%)

327(14%)

508(26.4%)

203(10.05%)

287(13.23%)

Xenobiotics biodegradation and metabolism

320(13.7%)

399(20.4%)

151(11.9%)

284(18.1%)

164(10.6%)

304(16.9%)

319(13.6%)

384(20%)

289(14.31%)

421(19.41%)

Total

2333

1954

1273

1565

1546

1803

2337

1923

2019

2169