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Table 2 Summary of expressed sequence tags (ESTs) from the five oil crops seed cDNA libraries

From: ocsESTdb: a database of oil crop seed EST sequences for comparative analysis and investigation of a global metabolic network and oil accumulation metabolism

Categories

No. of sequences generated

No. of high-quality sequences

Average size of high-quality sequences (bp)

Singletons

Contigs

No. of unigene

No. of ORF

Unabundancy

full length gene (%)

A. hypogaea

21,998

20,596

579

13,678

2,040

15,718

14,906

66.4%

57.0%

B. napus (HO)

78,332

69,938

216

14,582

7,130

21,712

7,658

20.9%

 

B. napus (LO)

57,870

50,656

213

9,734

4,165

13,899

4,028

19.2%

 

G. max

44,753

36,656

624

24,245

3,737

27,982

26,878

66.1%

55.0%

S. indicum

45,569

41,248

570

23,863

3,661

27,524

25,043

57.9%

45.0%

Total

248,522

219,094

 

86,102

20,733

106,835

78,513

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