Table 5 Bioinformatic analysis of functional annotation based on Pfam of the 75 predicted genes in the genomic region on Morex 5HL at the RphCantala locus based on linkage disequilibrium analysis performed on linked DArT-seq markers
Gene identifyer | Physical postion in Morex genome | Sequence annotation Pfam | Length (amino acid residues) |
|---|---|---|---|
MLOC_67435 | Chromosome 5: 504,807,504-504,808,889 | Uncharacterised protein | 1282 |
MLOC_63880 | Chromosome 5: 504,837,984-504,844,416 | Uncharacterised protein | 4770 |
MLOC_63879 | Chromosome 5: 504,837,985-504,840,518 | Peptidase domain | 1900 |
MLOC_14877 | Chromosome 5: 504,848,281-504,851,127 | Uncharacterised protein | 2578 |
MLOC_72642 | Chromosome 5: 504,851,380-504,854,051 | Uncharacterised protein/transmembrane | 818 |
MLOC_15752 | Chromosome 5: 504,856,869-504,860,258 | Uncharacterised protein//serine/threonine protein kinase | 1279 |
MLOC_67813 | Chromosome 5: 504,866,847-504,868,082 | Uncharacterised protein | 156 |
MLOC_58355 | Chromosome 5: 504,868,629-504,870,096 | Uncharacterised protein/Myb homeobox | 96 |
MLOC_39379 | Chromosome 5: 504,881,559-504,882,690 | CytochromeP450/uncharacterised protein | 193 |
MLOC_55782 | Chromosome 5: 505,224,634-505,228,648 | Uncharacterised protein/Bromodomain | 350 |
MLOC_12507 | Chromosome 5: 505,231,551-505,235,061 | Transmembrane domain/uncharacterised protein | 99 |
MLOC_56550 | Chromosome 5: 505,251,077-505,252,833 | Uncharacterised protein | 212 |
MLOC_67579 | Chromosome 5: 505,267,327-505,268,018 | Uncharacterised protein | 73 |
MLOC_79114 | Chromosome 5: 505,304,761-505,305,695 | Uncharacterised protein | 180 |
MLOC_38843 | Chromosome 5: 505,401,971-505,402,516 | Uncharacterised protein/zipper | 144 |
MLOC_22183 | Chromosome 5: 505,411,541-505,418,638 | Uncharacterised protein | 345 |
MLOC_22184 | Chromosome 5: 505,411,592-505,420,058 | Microtubule-associated protein | 556 |
MLOC_44070 | Chromosome 5: 505,421,803-505,425,401 | Uncharacterised protein | 346 |
MLOC_61309 | Chromosome 5: 505,435,524-505,436,686 | Uncharacterised protein | 176 |
MLOC_67384 | Chromosome 5: 505,437,805-505,442,456 | Uncharacterised protein/BIPPOZ fold | 190 |
MLOC_14335 | Chromosome 5: 505,450,976-505,451,416 | Uncharacterised protein | 46 |
MLOC_78241 | Chromosome 5: 505,457,197-505,458,593 | Glycosyltransferase 2 | 363 |
MLOC_37117 | Chromosome 5: 505,487,438-505,491,448 | Uncharacterised protein/MIP1 Leuczipper | 608 |
MLOC_63425 | Chromosome 5: 505,505,232-505,509,647 | Uncharacterised/AP2 transcription factor | 631 |
MLOC_58589 | Chromosome 5: 505,517,232-505,521,660 | Eukaryotic translation initiation factor 3 subunit C | 868 |
MLOC_71335 | Chromosome 5: 505,523,834-505,525,773 | Cytochrome P450/Uncharacterised protein | 453 |
MLOC_44341 | Chromosome 5: 505,572,931-505,576,253 | Uncharacterised protein | 515 |
MLOC_11008 | Chromosome 5: 505,604,769-505,610,921 | Kinesin motor domain/uncharacterised protein | 340 |
MLOC_55124 | Chromosome 5: 506,586,998-506,588,618 | Ribosomal S14/predicted protein | 56 |
MLOC_55125 | Chromosome 5: 506,594,987-506,597,286 | Uncharacterised protein | 284 |
MLOC_64140 | Chromosome 5: 506,607,831-506,611,618 | Malate dehydrogenase | 358 |
MLOC_39143.3 | Chromosome 5: 506,613,176-506,622,502 | Uncharacterised protein | 503 |
MLOC_4524 | Chromosome 5: 506,631,764-506,637,466 | Uncharacterised protein | 144 |
MLOC_63065 | Chromosome 5: 506,640,602-506,644,654 | Uncharacterised protein/protein-kinase domain leucine rich repeat | 608 |
MLOC_37278 | Chromosome 5: 506,647,621-506,649,939 | Uncharacterised/cytP450 | 515 |
MLOC_11920 | Chromosome 5: 506,671,388-506,671,569 | Uncharacterised protein | |
MLOC_61101 | Chromosome 5: 506,676,442-506,678,678 | Alpha/beta hydrolase domain/uncgharacterised | 377 |
MLOC_52788 | Chromosome 5: 506,712,820-506,716,335 | Alpha-tubulin 4 | 451 |
MLOC_52896.1 | Chromosome 5: 506,720,817-506,722,983 | Myb/Homeobox/Uncharacterised protein | 299 |
MLOC_77955 | Chromosome 5: 506,728,560-506,729,777 | Homeobox/leucine zipper/uncharacterised protein | 154 |
MLOC_52360.1 | Chromosome 5: 506,734,900-506,736,938 | tRNA-butesine synthase/uncharacterised protein | 240 |
MLOC_52361 | Chromosome 5: 506,737,533-506,741,133 | Pentatricopeptide/uncharacterised | 682 |
MLOC_17956 | Chromosome 5: 506,743,784-506,750,717 | Uncharacterised protein/N-acetylglucosaminyl transferase component (Gpi1) | 541 |
MLOC_66827 | Chromosome 5: 506,758,816-506,764,116 | AMP-binding enzyme/uncharacterised protein | 700 |
MLOC_71512 | Chromosome 5: 506,765,725-506,767,027 | Oligopeptide transporter | 292 |
MLOC_71514 | Chromosome 5: 506,771,066-506,774,511 | Uncharacterised protein | 947 |
MLOC_36533 | Chromosome 5: 506,774,624-506,778,739 | Giberellin signalling | 548 |
MLOC_36533 | Chromosome 5: 506,779,918-506,782,319 | NB-ARC protein/uncharacterised protein | 591 |
MLOC_79498 | Chromosome 5: 506,783,900-506,786,958 | Peptidase/protein inhibition/Uncharacterised protein | 377 |
MLOC_17927 | Chromosome 5: 506,792,732-506,798,457 | WRKY transcription factor /Uncharacterised protein | 1032 |
MLOC_66348 | Chromosome 5: 506,818,362-506,820,563 | NAM protein | 337 |
MLOC_16892 | Chromosome 5: 506,827,938-506,828,895 | Tetraspanin/peripherin/uncharacterised protein | 183 |
MLOC_14114 | Chromosome 5: 506,834,758-506,838,333 | FAD reductase/uncharacterised | 430 |
MLOC_23699 | Chromosome 5: 506,884,357-506,888,420 | RNA polymerase III | 120 |
MLOC_70664 | Chromosome 5: 506,907,468-506,911,192 | Lipoxygenase | 863 |
MLOC_17894 | Chromosome 5: 506,912,481-506,913,432 | Uncharacterised protein | 145 |
MLOC_10360 | Chromosome 5: 506,913,595-506,916,553 | NBS-ARC-LRR disease resistance protein/Uncharacterised | 766 |
MLOC_19228 | Chromosome 5: 506,923,278-506,929,445 | Cullin repeat-like superfamily | 351 |
MLOC_3679 | Chromosome 5: 506,929,610-506,930,486 | GTP binding Elongation factor | 113 |
MLOC_10567 | Chromosome 5: 506,948,227-506,953,875 | Inosine-5′-monophosphate dehydrogenase | 496 |
MLOC_44818 | Chromosome 5: 506,995,429-506,995,800 | Uncharacterised protein | 30 |
MLOC_76586 | Chromosome 5: 506,996,531-506,997,720 | Uncharacterised protein | 51 |
MLOC_66071 | Chromosome 5: 509,522,514-509,527,272 | Calmodulin binding protein/uncharacterised | 588 |
MLOC_66074 | Chromosome 5: 509,528,020-509,529,376 | Photosystem I reaction center subunit III | 439 |
MLOC_62114 | Chromosome 5: 509,534,583-509,540,642 | Calmodulin binding protein/uncharacterised | 615 |
MLOC_61300 | Chromosome 5: 509,556,146-509,556,624 | Uncharacterised protein/Zinc finger | 137 |
MLOC_61302 | Chromosome 5: 509,560,844-509,561,551 | Uncharacterised protein/Zinc finger | 156 |
MLOC_2917 | Chromosome 5: 509,561,748-509,564,141 | Protein binding GTP-Elongation Factor | 322 |
MLOC_66343 | Chromosome 5: 509,613,233-509,613,914 | Uncharacterised protein | 59 |
MLOC_7003 | Chromosome 5: 509,663,223-509,664,904 | Chaperone J | 96 |
MLOC_4695 | Chromosome 5: 509,722,893-509,727,266 | F-box domain cyclin/Uncharacterised protein | 411 |
MLOC_66212 | Chromosome 5: 509,843,699-509,844,569 | Uncharacterised protein | 245 |
MLOC_4789 | Chromosome 5: 509,860,275-509,861,218 | Uncharacterised protein | 146 |
MLOC_12556 | Chromosome 5: 509,866,159-509,866,865 | Uncharacterised protein | 110 |
MLOC_66971 | Chromosome 5: 509,878,445-509,880,991 | Ribose 5P isomerase |