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Table 3 Details of bioinformatic analyses of DArT-seq markers closely linked to RphCantala

From: Genetic mapping of a new race specific resistance allele effective to Puccinia hordei at the Rph9/Rph12locus on chromosome 5HL in barley

DArT locus_name

r 2with RphCantala

Bowman cM

C/S cM

Fisher's P-value

Barley physical

Bowman physical

Blastn P-value

Morex physical

Pfam Morex 5HL

DART4851

1

131.67

97.30

1.69E-17

5HL

506583400

3.40E-27

506781405-506781469

NB-ARC

DART4872

1

NA

90.74

1.69E-17

5HL

NA

1.80E-11

509749584-509749620

No match

DART7507

1

NA

97.30

5.33E-16

5HL

NA

2.00E-16

506713993-506714061

Tubulin -GTPase

DART7846

1

NA

NA

3.93E-12

5HL

NA

1.30E-19

9520434-9520483

Serine/threonine Protein Kinase

DART3079

0.937

130.9

102.04

1.38E-16

5HL

506583400

5.80E-32

9519766-9519834

Serine/threonine Protein Kinase

DART3263

0.937

134.72

NA

1.38E-16

5HL

509518480

1.40E-29

509705303-509705371

No match

DART5481

0.918

134.72

89.13

1.05E-12

5HL

509518480

5.80E-32

506948877-506948945

Inosine-5′-monophosphate dehydrogenase

DART2133

0.875

129.72

103.65

4.13E-15

5HL

505380600

1.40E-29

505484624-505484692

No match

DART2681

0.873

130.9

102.04

4.13E-15

5HL

506583400

1.40E-29

506600697-506604765

No match

DART6198

0.873

129.44

110.31

4.13E-15

5HL

504740440

1.40E-29

504879962-504880030

Cytochrome P450

DART4228

0.867

129.72

103.64

1.52E-14

5HL

505380600

5.80E-32

505484082-505484150

No match

DART4182

0.867

129.83

110.307

5.60E-14

5HL

505380600

5.80E-32

505506713-505506781

AP2 transcription factor

DART5422

0.857

129.83

111.92

7.50E-13

5HL

505380600

1.40E-29

505507578-505507646

AP2 transcription factor

DART461

0.817

129.44

115.15

6.41E-14

5HL

504780440

5.80E-32

504808312-504808380

Uncharacterised protein

  1. NA, not available.