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Table 1 Gene annotation of Hope Sr2 region and comparison with the corresponding region in CS

From: Major haplotype divergence including multiple germin-like protein genes, at the wheat Sr2 adult plant stem rust resistance locus

No. Name Annotation Hope gene start Hope gene end CS gene id CS gene pos
1 MSF_1$ Male sterility factor 29132 35097 ctg0011b.00010.1 8024
2 EP_1$ Hypothetical protein 39298 41832 ctg0011b.00020.1 16001
3 RKO_1$ Receptor kinase 45570 48036 ctg0011b.00030.1 21207
4 MSF_2$ Male sterility factor 174463 180047 ctg0011b.00040.1 130246
5 Flowering Locus T-like_1 Flowering Locus T-like protein 207129 208229 ctg0011b.00050.1 154860*
6 Flowering Locus T-like_2 Flowering Locus T-like protein 274176 275721 ctg0011b.00060.1 218850
7 Flowering Locus T-like_3 Flowering Locus T-like protein 322283 323263 ctg0011b.00070.1 281996
8 RKO_2 receptor kinase 329447 331621 ctg0011b.00080.1 293102
9 RKO_3 receptor kinase 332015 335105 ctg0011b.00090.1 295683
10 EMB_1 PPR repeat domain containing protein 339212 341395 ctg0011b.000100.1 307937
11 Flowering Locus T-like# Flowering Locus T-like protein - - ctg0011b.000110.1 351119
12 EMB_2# PPR repeat domain containing protein - - ctg0011b.000120.1 379263
13 WD domain* similar to WD domain, G-beta repeat 349395 355055 ctg0011b.000130.1 385794
14 GLP_1 Germin-like protein 398118 398929   -
15 GLP_2 Germin-like protein 399614 400424   -
16 GLP_3 Germin-like protein 423764 424562   -
17 GLP_4 Germin-like protein 425172 425984   -
18 GLP_10* Germin-like protein 444653 445216   
19 GLP_6* Germin-like protein 455726 456520   -
20 GLP_5* Germin-like protein 463024 463811   -
21 GLP_8 Germin-like protein 474211 475020   -
22 GLP_9 Germin-like protein 475777 476588   -
23 GLP_7 Germin-like protein 508822 509633   -
24 TPR1 Tetratricopeptide repeat domain containing protein 546645 549809 ctg0011b.000140.1 435705
25 D8LAL2 Hypothetical protein 562871 565156 ctg0011b.000160.1 447301
26 CD882879 Hypothetical protein 587682 589820   464713
27 TPR2* Tetratricopeptide repeat domain containing protein 613921 615236 ctg0011b.000170.1 498370
28 D8LAL1 Hypothetical protein 625926 626996 ctg0011b.000150.1 443924
29 CA696601 Hypothetical protein 670987 671361   
30 TPR2* Tetratricopeptide repeat domain containing protein 692673 695113 ctg0011b.000170.1 498370
31 CN010964 Hypothetical protein 710337 711484   574223*
32 CA694126 No annotation 712343 712774   507295*
33 HP626985 Hypothetical protein 776063 776392   507441*
34 CN010964 Hypothetical protein 809317 810476   574223*
35 FLA30 fasciclin-like arabinogalactan precursor 840622 841206 ctg0011b.000180.1 510269
36 BEX_1 beta-expansin 1a precursor 846394 847826 ctg0011b.000190.1 561427
37 BEX_2 beta-expansin 1a precursor 854813 856068 ctg0011b.000200.1 570188
38 BEX_3 beta-expansin 1a precursor 892334 893409   
39 BM138011_1 BTB-domain containing protein 909112 909465   
40 DOX_1$ disulfide oxidoreductase 914790 916571 ctg0011b.000210.1 590774
41 CA681101$ Hypothetical protein 923311 923709   599356
42 BM138011_2$ BTB-domain containing protein 926622 926983   602889
43 BTB-domain containing protein$   957404 959539   109661*
44 RGA_1$* similar to disease resistance RPM1-like protein 960894 966749 ctg0011b.000220.1 704997
  1. $Recombining genes; *partial genes/pseudogenes; Not present in Hope.