Allelic diversity in the transcriptomes of contrasting rust-infected genotypes of Lathyrus sativus, a lasting resource for smart breeding

Table 1 Log2 fold expression results for RNA-seq and qRT-PCR experiments

Reference assembly contig	BLAST hit	BGE015746							BGE024709
Reference assembly contig	BLAST hit	Control counts	Control RPKM	Inoculated counts	Inoculated RPKM	Inoculated/control DEGSeq (log2)	DEGSeq q-value	Inoculated/control qPCR (log2)	Control counts	Control RPKM	Inoculated counts	Inoculated RPKM	Inoculated/ control DEGSeq (log2)	DEGSeq q-value	Inoculated/ control qPCR (log2)
a1310;251	Chromodomain helicase DNA-binding protein	4063	0.0362	6436	0.0396	−0.53	1.0E-77	0.83	4149	0.0287	8009	0.0379	−0.33	1.7E-33	5.51
a15017;192	Type IIB calcium ATPase	850	0.0135	1855	0.0204	−0.07	3.2E-01	1.90	1165	0.0144	4635	0.0391	0.72	6.5E-64	3.38
a19532;154	Amino acid transporter	1965	0.0312	1328	0.0145	−1.76	8.4E-266	1.73	2045	0.0251	2224	0.0187	−1.15	3.2E-151	0.42
a22579;158	Hypothetical protein MTR 2 g062700	1329	0.0592	901	0.0277	−1.76	2.2E-179	−0.39	602	0.0208	245	0.0058	−2.57	3.0E-135	2.61
a2401;404	Lectin	776	0.0415	1061	0.0392	−0.75	1.5E-27	−1.35	813	0.0337	4283	0.1214	−1.12	6.8E-125	−1.92
a32859;123	Seed maturation protein	276	0.0438	185	0.0202	−1.77	1.9E-38	−3.74	104	0.0128	3	0.0003	−6.39	4.9E-39	−1.81
a45744;151	Mitochondrial chaperone BCS1	2	0.0004	36	0.0051	2.97	7.8E-05	6.29	7	0.0011	440	0.0480	4.70	1.2E-65	8.35
a5330;269	Alpha-galactosidase 1	1092	0.0373	1443	0.0341	−0.79	8.9E-43	−0.60	1203	0.0319	2387	0.0433	−0.29	2.8E-08	1.91
a6560;334	GDSL esterase/lipase EXL3	1981	0.0904	1917	0.0604	−1.24	3.3E-160	0.00	2164	0.0765	1101	0.0266	−2.25	0.0E + 00	0.39

ISSN: 1471-2229