From: Genome-wide association study of Fusarium ear rot disease in the U.S.A. maize inbred line collection
Chromosome | SNP physical position (bp) | p -value | FDR adjusted P-value | Minor allele frequency | Allele effect (%) a | ( R 2) b | Gene containing SNP | SNP effect | RMIP |
---|---|---|---|---|---|---|---|---|---|
 | Full inbred panel (1689 lines) analysis | ||||||||
5 | 64,771,372 | 8.83 × 10−7 | 0.089 | 0.07 | −0.170 | 1.3 | GRMZM2G060659 | mis-sense (A/T) | 0.38 |
9 | 19,532,465 | 8.44 × 10−8 | 0.017 | 0.15 | −0.134 | 1.5 | GRMZM2G035665 | mis-sense (V/A) | 0.94 |
 | Filtered inbred panel (737 lines tested in three years) analysis | ||||||||
4 | 7,566,354 | 7.34 × 10−7 | 0.074 | 0.10 | −0.230 | 2.9 | GRMZM2G372364 | intron variant |  |
4 | 7,618,125 | 2.67 × 10−6 | 0.175 | 0.10 | −0.225 | 2.6 | GRMZM2G012821 | mis-sense (N/D) |  |
4 | 7,618,284 | 3.96 × 10−6 | 0.175 | 0.11 | −0.205 | 2.5 | GRMZM2G012821 | mis-sense (D/N) |  |
4 | 9,353,851 | 6.14 × 10−7 | 0.074 | 0.07 | −0.254 | 3.0 | GRMZM2G419836 | 3′ UTR variant |  |
4 | 124,930,006 | 4.36 × 10−6 | 0.175 | 0.04 | −0.271 | 2.5 | GRMZM2G106752 | mis-sense (L/S) |  |