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Table 2 Wheat transporters and their expression during senescence

From: Regulation of Zn and Fe transporters by the GPC1gene during early wheat monocarpic senescence

Transporter

  

WT counts*

Differential expression**

Rice

Wheat

Chromosome

IWGSC ID

HD

12D

22D

Senescence

gpc-A1

gpc-A1/B2

Chloroplastic transporters

         

OsFRO1

TaFRO1

2AL

Traes_2AL_2A274FDB8

40,148

22,892

16,515

   
  

2BL

Traes_2BL_C7CDCB39A

48,913

30,272

13,838

⬇

  

OsFRO2

TaFRO2

2AL

Traes_2AL_7E818894E

3

1

6

   
  

2BL

Traes_2BL_E11AA2D03

49

8

9

   

OsHMA1

TaHMA1

7AL

Traes_7AL_84D5BAE85

1,143

1,256

1,249

   
  

7BL

Traes_7BL_041308E74

674

614

600

   
 

TaHMA1-like

5AL

Traes_5AL_C89EEBE50

1

2

1

   
  

5BL‡

Traes_5BL_F83C809F0

74

78

116

   

OsHMA2

TaHMA2

7AL

Traes_7AL_8304348B7

125

328

1,079

⬆

  
  

7BL

Traes_7BL_C46BC291C/ Traes_7BL_8C24C1025

185

356

1,205

⬆

  
 

TaHMA2-like

7AL

Traes_7AL_6AE850114

13

75

188

⬆

⬆

⬆

  

7BL

Traes_7BL_0CF58CF4E

2

13

17

⬆

  

OsHMA3

TaHMA3

5BL

Traes_5BL_D6C3DC326

-

-

-

   

Vacuolar transporters

OsVIT1

TaVIT1

2AL

Traes_2AL_A3A25F40E

59

44

36

   
  

2BL

Traes_2BL_54954138A

74

61

54

   

OsVIT2

TaVIT2

5BL

Traes_5BL_7CE3EDE29

1,938

566

450

   

OsNRAMP1

TaNRAMP1

7AL

Traes_7AL_76159C6DA

-

-

-

   
  

7BL

Traes_7BL_03741F576

3

6

1

   

OsNRAMP2

TaNRAMP2

4AS

Traes_4AS_BBF51CA2E

437

927

3,607

⬆

  
  

4BL

Traes_4BL_C6A3F5C8A

637

743

2,252

   

OsNRAMP3

TaNRAMP3

7AL

Traes_7AL_08B2A7BB2

640

704

469

   
  

7BL

Traes_7BL_CA6B7C9E6

551

571

352

   

OsNRAMP4

TaNRAMP4

6AS

Traes_6AS_B9B4AD633

1

1

1

   
  

6BS

N/A

3

5

5

   

OsNRAMP5

TaNRAMP5

4AS

Traes_4AS_5D4904831

6

2

2

   
  

4BL

Traes_4BL_04B01EA0C/ Traes_4BL_CFD804098

4

2

2

   

None

TaNRAMP6

3AS

Traes_3AS_538630B00

-

-

-

   
  

3B

Traes_3B_73F0469A5

10

9

19

   

OsNRAMP7

TaNRAMP7

5AS

Traes_5AS_213BE4D84

215

176

151

   
  

5BS

Traes_5BS_DE1CD2DA4

127

88

103

   

None

TaNRAMP8

4AL

Traes_4AL_2E796609C

-

-

-

   
  

4BS

Traes_4BS_9337E9B2F

-

-

-

   

OsZIFL1

TaZIFL1

3AS

Traes_3AS_C25151458

378

73

19

⬇

  
  

3B

Traes_3B_BD45F6269/ Traes_3B_45F864939

249

45

5

⬇

  

OsZIFL1

TaZIFL1-like1

3AS

Traes_3AS_02DE247DA

125

136

84

   
  

3B

Traes_3B_92383792E/ Traes_3B_B76607C0E

70

76

59

   

OsZIFL2

TaZIFL2

5BL

Traes_5BL_A0B9DE62E

1

2

2

   

OsZIFL2

TaZIFL2-like1

3AS

Traes_3AS_E59FB52EC

8

31

32

⬆

  
  

3B

Traes_3B_EDFDD5A12

167

305

383

   

None

TaZIFL3

4AL

Traes_4AL_4231650FC/ Traes_4AL_470869233

183

218

171

   
  

4BS

Traes_4BS_1DCF82CB7

525

1,019

743

⬆

  

None

TaZIFL7

5AL

Traes_5AL_37BFFFD9E

397

392

249

 

⬆

⬆

  

5BL

Traes_5BL_6E4AE0146

130

108

48

   

None

TaZIFL8

4AL

Traes_4AL_5C7A4DA54

21

19

13

   
  

4BS

Traes_4BS_44732F50F

141

112

160

   

None

TaZIFL9

5AL

Traes_5AL_0599F7BC5

-

-

-

   
  

5BL

N/A

-

-

-

   

Plasma membrane transporters

OsYSL1

TaYSL1

3AS

Traes_3AS_FB4110335

10

7

8

   
  

3B

Traes_3B_17BC3E1E2

1

1

1

   

OsYSL2

TaYSL2

6AL

Traes_6AL_850660AC3

56

35

53

   
  

6BL

Traes_6BL_3DD0BA741

51

61

62

   

OsYSL6

TaYSL6

2AL

Traes_2AL_7B0F93F84

364

526

986

⬆

  
  

2BL

Traes_2BL_0CBCC13AD

68

101

203

   

OsYSL9

TaYSL9

2AL

Traes_2AL_CFCA01C76

725

995

1,517

⬆

  
  

2BL

N/A

15

18

28

   

OsYSL10

TaYSL10

6AL

Traes_6AL_5642D5B44

42

46

35

   

OsYSL11

TaYSL11

2AL

Traes_2AL_377C8CDEA

0

0

0

   
  

2BL

Traes_2BL_68E0CA743

3

5

3

   

OsYSL12

TaYSL12

2AL‡

Traes_2AL_CC6133527

554

701

1,389

   
  

2BL

Traes_2BL_2BE05F104

437

563

454

  

⬇

OsYSL13

TaYSL13

2AL

Traes_2AL_F707FF2C3.3

14

20

75

   
  

2BL

Traes_2BL_A14EA5AE4

1

1

3

   
 

TaYSL13-like

2BL

Traes_2BL_A14EA5AE4

7

19

85

   

OsYSL14

TaYSL14

6AL

Traes_6AL_7FB45D4DE

814

894

733

   
  

6BL

Traes_6BL_7FFC46B84

500

628

493

   

OsYSL15

TaYSL15

6AL

Traes_6AL_E36FCEF64

523

486

969

   
  

6BL

Traes_6BL_D65EC1432

88

95

199

   
 

TaYSL15-like

1AL

Traes_1AL_C6A0E255E

4

7

9

   
  

1BL

Traes_1BL_CA93E6359

2

2

2

   

OsYSL16

TaYSL16

2BL

Traes_2BL_4A1181B731

2,736

2,361

2,011

   

None

TaYSL18

2AL

Traes_2AL_2F91AF932

225

144

84

⬇

  
  

2BL

Traes_2BL_6C5206B6D

531

499

510

   

OsIRT1

TaIRT-like1

4AL

Traes_4AL_9D79BE8FB

5

7

10

   
  

4BS

Traes_4BS_6527BBD54

8

6

7

   

OsIRT2

TaIRT-like 2

4AL

Traes_4AL_9F6B106F3

9

21

30

  

⬆

OsZIP10

TaZIP10

7AL

Traes_7AL_A13A246B4

333

596

531

 

⬆

⬆

  

7BL

Traes_7BL_E5CFC3DCE/ Traes_7BL_5C965DB64

267

531

482

 

⬆

⬆

OsZIP10

TaZIP10-like1

7AL

Traes_7AL_F1D611563/ Traes_7AL_893DEB3EB

7

229

279

⬆

⬆

⬆

  

7BL

Traes_7BL_12C63350C

5

654

647

⬆

⬆

⬆

OsZIP8

TaZIP13-like1

6BS

Traes_6BS_7D630200B

2

2

2

   
 

TaZIP13-like2

2AS

Traes_2AS_4CA7607E5

277

4,469

3,207

⬆

⬆

⬆

  

2BS

Traes_2BS_9D8F265EC

79

916

787

⬆

⬆

⬆

 

TaZIP13-like3

2AL

Traes_2AL_BE05B34FF

125

129

135

   
  

2BL

Traes_2BL_A1BCBD2BE

102

1,613

1,466

⬆

⬆

⬆

OsZIP1

TaZIP1†

3AL

Traes_3AL_DC3D5F65E

2

1

4

   
  

3B

Traes_3B_3C18D89F8

3

4

8

   

OsZIP2

TaZIP2†

5BL

N/A

17

9

9

   

OsZIP2

TaZIP2-like

6AS

Traes_6AS_75C6428051

-

-

-

   
  

6BS

N/A

73

65

34

   

OsZIP3

TaZIP3†

2AL

Traes_2AL_3983FD077

21

115

138

⬆

⬆

⬆

  

2BL

Traes_2BL_23F1C8743

61

130

291

 

⬆

⬆

OsZIP5

TaZIP5

4AS

Traes_4AS_F5F7D2A8D

0

1

3

   
  

4BL

Traes_4BL_68691F1FC

10

76

176

 

⬆

⬆

OsZIP6

TaZIP6†

1AS

Traes_1AS_A6EF18CC1

527

488

439

   
  

1BS

Traes_1BS_B734EDEA7

413

532

478

   

OsZIP7

TaZIP7†

1AS

Traes_1AS_EC8891094/ Traes_1AS_50323685E

216

606

880

⬆

⬆

⬆

  

1BS

Traes_1BS_D68F0BED6

317

1,194

1,566

⬆

⬆

⬆

OsZIP11

TaZIP11

1AS

Traes_1AS_7DC2CB902

378

357

519

   
  

1BS

N/A

193

186

281

   

OsZIP13

TaZIP15

6AS

Traes_6AS_4E1D574BC

322

354

332

   
  

6BS

Traes_6BS_147BF2D07

726

678

513

   

OsZIP14

TaZIP14†

3AS

Traes_3AS_F46E02204/ Traes_3AS_15A221AD0

97

77

103

   
  

3B

Traes_3B_B7D3B69FD

229

192

213

   

OsZIP16

TaZIP16

7AL

Traes_7AL_DFE86911E

15

14

9

   
  

7BL

Traes_7BL_2637B2942/ Traes_7BL_EB231D8FF

12

13

6

   

PS biosynthesis genes

OsNAS1

TaNAS1

2AS

Traes_2AS_D50EEDA84

2

5

4

   
  

2BS

N/A

121

117

117

   

OsNAS3

TaNAS3

2AS

Traes_2AS_DEDC612AE/ Traes_2AS_452FED53F

2,056

2,694

4,495

  

⬆

  

2BS

Traes_2BS_CB79BAFB1

5,362

5,109

7,789

  

⬆

OsNAAT1

TaNAAT1

1AL

Traes_1AL_9D6B86169

47

88

102

 

⬆

⬆

OsNAAT1

TaNAAT2

1AL

Traes_1AL_BCD7C5B8B

127

280

269

⬆

⬆

⬆

  

1BL

Traes_1BL_D8276D3DB

188

453

602

 

⬆

⬆

OsDMAS1

TaDMAS1

4AS

Traes_4AS_887399584

27

26

17

   
  

4BL

N/A

1222

883

1134

   
  1. † Source: Tiong et al. [21]. All NRAMP genes from Borrill et al. [7]. TaDMAS from Bashir et al. [26]. ‡ Predicted non-functional protein.
  2. *Counts are normalized values of reads uniquely mapped to the genomic loci corresponding to each wheat transporter gene. **Arrows indicate whether the gene was significantly upregulated (⬆) or downregulated (⬇) during senescence in WT plants or in WT vs. gpc-A1 or WT vs. gpc-A1/gpc-B2 comparisons (⬆ = significantly higher in WT).