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Table 2 Results of BLASTx searches against MDPs and Malus ESTs

From: Columnar apple primary roots share some features of the columnar-specific gene expression profile of aerial plant parts as evidenced by RNA-Seq analysis

  MDPs Malus ESTs
  # contigs with hits (% of total contigs) # different hits (% of contigs with hits) # contigs with hits (% of total contigs) # different hits (% of contigs with hits)
PR (−/−) 40010 (83) 25197 (63) 38094 (79) 31484 (83)
PR (Co/-) 37666 (85) 23966 (64) 35816 (81) 30183 (84)
PR (Co/Co) 40110 (82) 25100 (63) 38208 (78) 31583 (83)
PRs (−/−) 28377 (87) 19456 (69) 26746 (82) 23621 (88)
PRs (Co/-) 25278 (89) 17481 (69) 23550 (83) 21262 (90)
PRs (Co/Co) 32067 (85) 21350 (67) 30071 (80) 26012 (87)
  1. The number and percentage of contigs yielding a hit and the number of different hits are indicated. The percentage of different hits refers to the total number of contigs and thus represents an estimate for the percentage of contigs representing individual genes.