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Table 1 Results of assemblies

From: Columnar apple primary roots share some features of the columnar-specific gene expression profile of aerial plant parts as evidenced by RNA-Seq analysis

 

# raw seqs

k-mer size

# contigs

GC content (%)

Longest contig

Shortest contig

N50

Reads mapped back (%)

PR (−/−)

118400555

17

48023

43

9994

200

1484

63

PR (Co/-)

104464241

17

44197

44

10381

200

1455

59

PR (Co/Co)

125731385

17

48932

43

16563

200

1487

60

PRs (−/−)

40261320

18

32471

45

11741

200

1288

43

PRs (Co/-)

27708416

18

28493

45

13248

200

1242

40

PRs (Co/Co)

67322394

18

37527

44

8970

200

1329

52

  1. Illumina sequences were assembled and key values for contigs are indicated. The percentage of reads that was successfully mapped back to the contigs as a reference is shown in the last column.