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Table 1 Results of assemblies

From: Columnar apple primary roots share some features of the columnar-specific gene expression profile of aerial plant parts as evidenced by RNA-Seq analysis

  # raw seqs k-mer size # contigs GC content (%) Longest contig Shortest contig N50 Reads mapped back (%)
PR (−/−) 118400555 17 48023 43 9994 200 1484 63
PR (Co/-) 104464241 17 44197 44 10381 200 1455 59
PR (Co/Co) 125731385 17 48932 43 16563 200 1487 60
PRs (−/−) 40261320 18 32471 45 11741 200 1288 43
PRs (Co/-) 27708416 18 28493 45 13248 200 1242 40
PRs (Co/Co) 67322394 18 37527 44 8970 200 1329 52
  1. Illumina sequences were assembled and key values for contigs are indicated. The percentage of reads that was successfully mapped back to the contigs as a reference is shown in the last column.