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Figure 5 | BMC Plant Biology

Figure 5

From: Columnar apple primary roots share some features of the columnar-specific gene expression profile of aerial plant parts as evidenced by RNA-Seq analysis

Figure 5

Differential gene expression in the Co target region. Fold changes of RNA-Seq samples (upper panel) and n-fold expression of qRT-PCR experiments (lower panel) in different tissues were calculated for up to eight genes located in the vicinity of Gypsy-44 as well as for Gypsy-44 itself in at least two biological replicates. Positions on the metacontig are given. Blue bars indicate fold changes for the non-columnar sample (normalized to 1), red and light pink bars indicate fold changes in the heterozygous and homozygous columnar sample, respectively, for a comparison with the non-columnar sample. Two parallel lines on a bar and the y axis represent a broken axis. Absolute read counts of 0 or 1 in both genotypes of a tissue are considered no expression (n.e.). Error bars in qRT-PCR bar chart represent standard deviations of three technical replicates. The two orange boxes below the two panels of graphs signify zoom-ins on the dmr6-like graphs within the region 0 – 2.

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BMC Plant Biology

ISSN: 1471-2229

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