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Table 2 Discovery of miRNA families and members in wild progenitor W14 and cassava cultivars KU50 and Arg7

From: Potential functions of microRNAs in starch metabolism and development revealed by miRNA transcriptome profiling of cassava cultivars and their wild progenitor

miRNA family Members
W14 Arg7 KU50
Leaf Root Leaf Root Leaf Root
156 11 11 11 11 9 9
159, 162, 393, 403, 408, 2111 2 2 2 2 2 2
160 7 7 7 7 4 4
164 3 4 4 4 3 4
166 8 8 8 8 8 8
167 6 6 6 6 5 5
168, 391, 397, 398, 530, 827, 2950 1 1 1 1 1 1
169 5 5 5 5 4 4
171 9 9 9 9 9 9
172 0 2 0 2 0 2
319 5 6 6 6 6 6
390 3 3 3 3 2 2
394 3 3 3 3 3 3
395 4 4 4 4 4 4
396 4 4 4 4 3 3
399 7 7 8 7 4 3
477 5 5 5 5 4 4
535 3 3 3 3 1 1
New-1, −4, −7, −27, −28 0 0 1 1 1 1
New-3, −25, −34 1 1 1 1 0 1
New-5, −6, −26 2 2 2 2 2 2
New-8 to −11, −22 to −24, −30 to −32 1 1 1 1 1 1
New-12 0 0 1 0 1 1
New-13 to −16 0 0 1 1 1 1
New-17, −33 1 0 1 1 1 1
New-18 0 1 1 1 1 0
New-19 0 1 1 1 0 0
New-20 4 4 4 4 4 4
New-21, −29 0 1 1 1 1 1
  1. Whereas “0” indicates that no miRNA is detected in the corresponding genotype/organ, a number from “1” to “11” indicates the number of detected members of the miRNA family; new miRNAs have names in the format of “new-#”, for example, new-1.
  2. Those miRNAs with names that are underlined were previously reported by Zeng et al. [22].
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BMC Plant Biology

ISSN: 1471-2229

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